Visualizing Decisions and Analytics of Artificial Intelligence based Cancer Diagnosis and Grading of Specimen Digitized Biopsy: Case Study for Prostate Cancer.

Raimond L. Winslow Akarsh Singh Michael Wan Lane Harrison Anne Breggia Robert Christman Raimond L. Winslow Saeed Amal Visualizing Decisions and Analytics of Artificial Intelligence based Cancer Diagnosis and Grading of Specimen Digitized Biopsy: Case Study for Prostate Cancer. 166-170 2023 IUI Companion https://doi.org/10.1145/3581754.3584177 conf/iui/2023c db/conf/iui/iui2023c.html#SinghWHBCWA23

Qingchu Jin Joseph L. Greenstein Raimond L. Winslow Estimating ectopic beat probability with simplified statistical models that account for experimental uncertainty. 2021 17 PLoS Comput. Biol. 10 https://doi.org/10.1371/journal.pcbi.1009536 https://www.wikidata.org/entity/Q113308991 db/journals/ploscb/ploscb17.html#JinGW21

Akshaya V. Annapragada Joseph L. Greenstein Sanjukta N. Bose Bradford D. Winters Sridevi V. Sarma Raimond L. Winslow SWIFT: A deep learning approach to prediction of hypoxemic events in critically-Ill patients using SpO2 waveform prediction. 2021 17 PLoS Comput. Biol. 12 https://doi.org/10.1371/journal.pcbi.1009712 https://www.wikidata.org/entity/Q113308850 db/journals/ploscb/ploscb17.html#AnnapragadaGBWS21

Ran Liu Joseph L. Greenstein James C. Fackler Jules Bergmann Melania M. Bembea Raimond L. Winslow Offline reinforcement learning with uncertainty for treatment strategies in sepsis. 2021 abs/2107.04491 CoRR https://arxiv.org/abs/2107.04491 db/journals/corr/corr2107.html#abs-2107-04491

Han B. Kim Hieu Nguyen Qingchu Jin Sharmila Tamby Tatiana Gelaf Romer Eric Sung Ran Liu Joseph L. Greenstein Jose I. Suarez Christian Storm Raimond L. Winslow Robert D. Stevens 0002 A Physiology-Driven Computational Model for Post-Cardiac Arrest Outcome Prediction. 2020 abs/2002.03309 CoRR https://arxiv.org/abs/2002.03309 db/journals/corr/corr2002.html#abs-2002-03309

Ran Liu Joseph L. Greenstein Sridevi V. Sarma Raimond L. Winslow Natural Language Processing of Clinical Notes for Improved Early Prediction of Septic Shock in the ICU. 6103-6108 2019 EMBC https://doi.org/10.1109/EMBC.2019.8857819 https://www.wikidata.org/entity/Q92700515 conf/embc/2019 db/conf/embc/embc2019.html#LiuGSW19

Mark A. Walker Viatcheslav Gurev John Jeremy Rice Joseph L. Greenstein Raimond L. Winslow Estimating the probabilities of rare arrhythmic events in multiscale computational models of cardiac cells and tissue. 2017 13 PLoS Comput. Biol. 11 https://doi.org/10.1371/journal.pcbi.1005783 https://www.wikidata.org/entity/Q45984923 db/journals/ploscb/ploscb13.html#WalkerGRGW17

Raimond L. Winslow Stephen Granite Christian Jurado WaveformECG: A Platform for Visualizing, Annotating, and Analyzing ECG Data. 36-46 2016 18 Comput. Sci. Eng. 5 https://doi.org/10.1109/MCSE.2016.91 http://doi.ieeecomputersociety.org/10.1109/MCSE.2016.91 https://www.wikidata.org/entity/Q33813845 db/journals/cse/cse18.html#WinslowGJ16

Siamak Ardekani Saurabh Jain Alianna Sanzi Celia P. Corona-Villalobos Theodore P. Abraham M. Roselle Abraham Stefan L. Zimmerman Katherine C. Wu Raimond L. Winslow Michael I. Miller Laurent Younes Shape analysis of hypertrophic and hypertensive heart disease using MRI-based 3D surface models of left ventricular geometry. 12-23 2016 29 Medical Image Anal. https://doi.org/10.1016/j.media.2015.11.004 https://www.wikidata.org/entity/Q36851500 db/journals/mia/mia29.html#ArdekaniJSCAAZW16

Andrew R. Post Akshatha K. Pai Richard Willard Bradley J. May Andrew C. West Sanjay Agravat Stephen J. Granite Raimond L. Winslow David Stephens Metadata-driven Clinical Data Loading into i2b2 for Clinical and Translational Science Institutes. 2016 CRI http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t003-1.3012832/f003-1.3012833/a036-1.3012885/a038-1.3012880 conf/cri/2016 db/conf/cri/cri2016.html#PostPWMWAGWS16

Mark A. Walker Tobias Kohl Stephan E. Lehnart Joseph L. Greenstein W. J. Lederer Raimond L. Winslow On the Adjacency Matrix of RyR2 Cluster Structures. 2015 11 PLoS Comput. Biol. 11 https://doi.org/10.1371/journal.pcbi.1004521 https://www.wikidata.org/entity/Q35834522 db/journals/ploscb/ploscb11.html#WalkerKLGLW15

Sabato Santaniello Stephen J. Granite Sridevi V. Sarma Raimond L. Winslow Computing network-based features from physiological time series: Application to sepsis detection. 3825-3826 2014 EMBC https://doi.org/10.1109/EMBC.2014.6944457 https://www.wikidata.org/entity/Q41555465 conf/embc/2014 db/conf/embc/embc2014.html#SantanielloGSW14

Shane Steinert-Threlkeld Siamak Ardekani José L. V. Mejino Jr. Landon Detwiler James F. Brinkley Michael Halle Ron Kikinis Raimond L. Winslow Michael I. Miller J. Tilak Ratnanather Ontological labels for automated location of anatomical shape differences. 522-527 2012 45 J. Biomed. Informatics 3 https://doi.org/10.1016/j.jbi.2012.02.013 https://www.wikidata.org/entity/Q28728664 db/journals/jbi/jbi45.html#Steinert-ThrelkeldAMDBHKWMR12

Yasmin L. Hashambhoy Raimond L. Winslow Joseph L. Greenstein CaMKII-dependent activation of late INa contributes to cellular arrhythmia in a model of the cardiac myocyte. 4665-4668 2011 EMBC https://doi.org/10.1109/IEMBS.2011.6091155 https://www.wikidata.org/entity/Q36455012 conf/embc/2011 db/conf/embc/embc2011.html#HashambhoyWG11 Sonia Cortassa Miguel Antonio Aon Brian O'Rourke Raimond L. Winslow Metabolic control analysis applied to mitochondrial networks. 4673-4676 2011 EMBC https://doi.org/10.1109/IEMBS.2011.6091157 https://www.wikidata.org/entity/Q35948605 conf/embc/2011 db/conf/embc/embc2011.html#CortassaAOW11 Siamak Ardekani Aastha Jain Saurabh Jain Theodore P. Abraham Maria Roselle Abraham Stefan L. Zimmerman Raimond L. Winslow Michael I. Miller Laurent Younes Matching Sparse Sets of Cardiac Image Cross-Sections Using Large Deformation Diffeomorphic Metric Mapping Algorithm. 234-243 2011 STACOM https://doi.org/10.1007/978-3-642-28326-0_24 conf/miccai/2011stacom db/conf/miccai/stacom2011.html#ArdekaniJJAAZWMY11 Shane Steinert-Threlkeld Siamak Ardekani José L. V. Mejino Jr. Landon Detwiler James F. Brinkley Michael Halle Ron Kikinis Raimond L. Winslow Michael I. Miller J. Tilak Ratnanather Ontological Labels for Automated Location of Left Ventricular Remodeling. 572-573 2011 ICSC https://doi.org/10.1109/ICSC.2011.99 https://doi.ieeecomputersociety.org/10.1109/ICSC.2011.99 conf/semco/2011 db/conf/semco/icsc2011.html#Steinert-ThrelkeldAMDBHKWMR11

Lufang Zhou Miguel Antonio Aon Tabish Almas Sonia Cortassa Raimond L. Winslow Brian O'Rourke A Reaction-Diffusion Model of ROS-Induced ROS Release in a Mitochondrial Network. 2010 6 PLoS Comput. Biol. 1 https://doi.org/10.1371/journal.pcbi.1000657 https://www.wikidata.org/entity/Q33529043 db/journals/ploscb/ploscb6.html#ZhouAACWO10

Siamak Ardekani Robert G. Weiss Albert C. Lardo Richard T. George Joao A. C. Lima Katherine C. Wu Michael I. Miller Raimond L. Winslow Laurent Younes Cardiac Motion Analysis in Ischemic and Non-Ischemic Cardiomyopathy Using Parallel Transport. 899-902 2009 ISBI https://doi.org/10.1109/ISBI.2009.5193198 https://www.wikidata.org/entity/Q33616719 conf/isbi/2009 db/conf/isbi/isbi2009.html#ArdekaniWLGLWMWY09

Lei Xu 0014 Aik Choon Tan Raimond L. Winslow Donald Geman Merging microarray data from separate breast cancer studies provides a robust prognostic test. 2008 9 BMC Bioinform. https://doi.org/10.1186/1471-2105-9-125 https://www.wikidata.org/entity/Q31147871 db/journals/bmcbi/bmcbi9.html#XuTWG08

Laurent Younes Anqi Qiu Raimond L. Winslow Michael I. Miller Transport of Relational Structures in Groups of Diffeomorphisms. 41-56 2008 32 J. Math. Imaging Vis. 1 https://doi.org/10.1007/s10851-008-0074-5 https://www.wikidata.org/entity/Q37374257 db/journals/jmiv/jmiv32.html#YounesQWM08

Lei Xu 0014 Donald Geman Raimond L. Winslow Large-scale integration of cancer microarray data identifies a robust common cancer signature. 2007 8 BMC Bioinform. https://doi.org/10.1186/1471-2105-8-275 https://www.wikidata.org/entity/Q31120275 db/journals/bmcbi/bmcbi8.html#XuGW07

Antti Tanskanen Raimond L. Winslow Integrative Structurally Detailed Model of Calcium Dynamics in the Cardiac Diad. 1280-1296 2006 5 Multiscale Model. Simul. 4 https://doi.org/10.1137/05064549X db/journals/mmas/mmas5.html#TanskanenW06

Yan Cao Michael I. Miller Susumu Mori Raimond L. Winslow Laurent Younes Diffeomorphic Matching of Diffusion Tensor Images. 67 2006 CVPR Workshops https://doi.org/10.1109/CVPRW.2006.65 https://doi.ieeecomputersociety.org/10.1109/CVPRW.2006.65 https://www.wikidata.org/entity/Q34131291 conf/cvpr/2006w db/conf/cvpr/cvprw2006.html#CaoMMWY06

Aik Choon Tan Daniel Q. Naiman Lei Xu 0014 Raimond L. Winslow Donald Geman Simple decision rules for classifying human cancers from gene expression profiles. 3896-3904 2005 21 Bioinform. 20 https://doi.org/10.1093/bioinformatics/bti631 https://www.wikidata.org/entity/Q41735339 db/journals/bioinformatics/bioinformatics21.html#TanNXWG05

Lei Xu 0014 Aik Choon Tan Daniel Q. Naiman Donald Geman Raimond L. Winslow Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data. 3905-3911 2005 21 Bioinform. 20 https://doi.org/10.1093/bioinformatics/bti647 https://www.wikidata.org/entity/Q31002200 db/journals/bioinformatics/bioinformatics21.html#XuTNGW05

Yan Cao Michael I. Miller Raimond L. Winslow Laurent Younes Large deformation diffeomorphic metric mapping of vector fields. 1216-1230 2005 24 IEEE Trans. Medical Imaging 9 https://doi.org/10.1109/TMI.2005.853923 https://www.wikidata.org/entity/Q34450165 db/journals/tmi/tmi24.html#CaoMWY05

Yan Cao Michael I. Miller Raimond L. Winslow Laurent Younes Large Deformation Diffeomorphic Metric Mapping of Fiber Orientations. 1379-1386 2005 conf/iccv/2005 ICCV https://doi.org/10.1109/ICCV.2005.132 https://doi.ieeecomputersociety.org/10.1109/ICCV.2005.132 https://www.wikidata.org/entity/Q56624053 db/conf/iccv/iccv2005-2.html#CaoMWY05

Michael Bober Kevin Wiehe Christina K. Yung Tugba Onal Suzek Matthew Lin William Baumgartner Jr. Raimond L. Winslow CaGE: Cardiac gene expression knowledgebase. 1013-1014 2002 18 Bioinform. 7 db/journals/bioinformatics/bioinformatics18.html#BoberWYSLBW02 https://doi.org/10.1093/bioinformatics/18.7.1013 https://www.wikidata.org/entity/Q32158726

Raimond L. Winslow David F. Scollan Joseph L. Greenstein Christina K. Yung William Baumgartner Jr. Gyan Bhanot Donna L. Gresh Bernice E. Rogowitz Mapping, modeling, and visual exploration of structure-function relationships in the heart. 342-359 2001 40 IBM Syst. J. 2 https://doi.org/10.1147/sj.402.0342 db/journals/ibmsj/ibmsj40.html#WinslowSGYBBGR01

Donna L. Gresh Bernice E. Rogowitz Raimond L. Winslow David F. Scollan Christina K. Yung WEAVE: a system for visually linking 3-D and statistical visualizations, applied to cardiac simulation and measurement data. 489-492 2000 conf/visualization/2000 IEEE Visualization https://doi.org/10.1109/VISUAL.2000.885739 https://doi.ieeecomputersociety.org/10.1109/VISUAL.2000.885739 https://dl.acm.org/citation.cfm?id=375311 db/conf/visualization/visualization2000.html#GreshRWSY00

Peter N. Steinmetz Raimond L. Winslow Optimal Detection of Flash Intensity Differences Using Rod Photocurrent Observations. 1097-1111 1999 11 Neural Comput. 5 db/journals/neco/neco11.html#SteinmetzW99 https://doi.org/10.1162/089976699300016368 https://www.wikidata.org/entity/Q64887920

John L. Maryak Richard H. Smith Raimond L. Winslow Modeling Cardiac Ion Channel Conductivity: Model Fitting via Simulation. 1587-1590 1998 conf/wsc/1998 WSC https://doi.org/10.1109/WSC.1998.746033 https://doi.ieeecomputersociety.org/10.1109/WSC.1998.746033 http://dl.acm.org/citation.cfm?id=293540 db/conf/wsc/wsc1998.html#MaryakSW98

Ying-Cheng Lai Raimond L. Winslow Murray B. Sachs A model of selective processing of auditory-nerve inputs by stellate cells of the antero-ventral cochlear nucleus. 167-194 1994 1 J. Comput. Neurosci. 3 https://doi.org/10.1007/BF00961733 https://www.wikidata.org/entity/Q41101642 db/journals/jcns/jcns1.html#LaiWS94

Ying-Cheng Lai Raimond L. Winslow Murray B. Sachs The Functional Role of Excitatory and Inhibitory Interactions in Chopper Cells of the Anteroventral Cochlear Nucleus. 1127-1140 1994 6 Neural Comput. 6 https://doi.org/10.1162/neco.1994.6.6.1127 https://www.wikidata.org/entity/Q115391379 db/journals/neco/neco6.html#LaiWS94

Dongming Cai Raimond L. Winslow Denis Noble Effects of gap junction conductance on dynamics of sinoatrial node cells: two-cell and large-scale network models. 217-231 1994 41 IEEE Trans. Biomed. Eng. 3 https://doi.org/10.1109/10.284940 https://www.wikidata.org/entity/Q52380753 db/journals/tbe/tbe41.html#CaiWN94 streams/journals/tbe

Raimond L. Winslow Dongming Cai Ying-Cheng Lai Factors controlling generation and propagation of pacemaker potentials in network models of mammalian SA node. 560-569 1994 conf/sc/1994 SC https://doi.org/10.1109/SUPERC.1994.344320 https://doi.ieeecomputersociety.org/10.1109/SUPERC.1994.344320 http://dl.acm.org/citation.cfm?id=602865 db/conf/sc/sc1994.html#WinslowCL94 A. L. Kimball Raimond L. Winslow Modeling the retinal horizontal cell layer on a massively parallel processor: a detailed neural network model. 792-798 1990 conf/spdp/1990 SPDP https://doi.org/10.1109/SPDP.1990.143647 https://doi.ieeecomputersociety.org/10.1109/SPDP.1990.143647 db/conf/spdp/spdp90.html#KimballW90 Ronald S. Cheung Raimond L. Winslow High quality 16 kb/s voice transmission: The subband coder approach. 319-322 1980 ICASSP https://doi.org/10.1109/ICASSP.1980.1170942 conf/icassp/1980 db/conf/icassp/icassp1980.html#CheungW80 M. Roselle AbrahamMaria Roselle Abraham Theodore AbrahamTheodore P. Abraham Sanjay Agravat Tabish Almas Saeed Amal Akshaya V. Annapragada Miguel Antonio Aon Siamak Ardekani William Baumgartner Jr. Melania M. Bembea Jules Bergmann Gyan Bhanot Michael Bober Sanjukta N. Bose Anne Breggia James F. Brinkley Dongming Cai Yan Cao Ronald S. Cheung Robert Christman Celia P. Corona-Villalobos Sonia Cortassa Landon Fridman DetwilerLandon Detwiler James C. Fackler Donald Geman Richard T. George Stephen GraniteStephen J. Granite Joseph L. Greenstein Donna L. Gresh Viatcheslav Gurev Michael Halle Lane Harrison Yasmin L. Hashambhoy Aastha Jain Saurabh Jain Qingchu Jin Christian Jurado Ron Kikinis Han B. Kim A. L. Kimball Tobias Kohl Ying-Cheng Lai Albert C. Lardo W. J. Lederer Stephan E. Lehnart Joao A. C. Lima Matthew Lin Ran Liu John L. Maryak Bradley J. May José L. V. Mejino Jr. Michael I. Miller Susumu Mori Daniel Q. Naiman Hieu Nguyen Denis Noble Brian O'Rourke Akshatha K. Pai Andrew R. Post Anqi Qiu J. Tilak Ratnanather John Jeremy Rice Bernice E. Rogowitz Tatiana Gelaf Romer Murray B. Sachs Sabato Santaniello Alianna Sanzi Sridevi V. Sarma David F. Scollan Akarsh Singh Richard H. Smith Shane Steinert-Threlkeld Peter N. Steinmetz David Stephens Robert D. Stevens 0002 Christian Storm Jose I. Suarez Eric Sung Tugba O. SuzekTugba Onal Suzek Sharmila Tamby Aik Choon Tan Antti Tanskanen Mark A. Walker Michael Wan Robert G. Weiss Andrew C. West Kevin Wiehe Richard Willard Bradford D. Winters Katherine C. Wu Lei Xu 0014 Laurent Younes Christina K. Yung Lufang Zhou Stefan L. Zimmerman