{"id":"https://openalex.org/W1494359657","doi":"https://doi.org/10.1007/978-3-642-03095-6_1","title":"Length Encoded Secondary Structure Profile for Remote Homologous Protein Detection","display_name":"Length Encoded Secondary Structure Profile for Remote Homologous Protein Detection","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1494359657","doi":"https://doi.org/10.1007/978-3-642-03095-6_1","mag":"1494359657"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-642-03095-6_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03095-6_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029729585","display_name":"Yen-Chu Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I153512688","display_name":"National Taiwan Ocean University","ror":"https://ror.org/03bvvnt49","country_code":"TW","type":"education","lineage":["https://openalex.org/I153512688"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yen-Chu Hsu","raw_affiliation_strings":["Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","institution_ids":["https://openalex.org/I153512688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068618830","display_name":"Chien\u2010Ming Chen","orcid":"https://orcid.org/0000-0002-6502-472X"},"institutions":[{"id":"https://openalex.org/I153512688","display_name":"National Taiwan Ocean University","ror":"https://ror.org/03bvvnt49","country_code":"TW","type":"education","lineage":["https://openalex.org/I153512688"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Ming Chen","raw_affiliation_strings":["Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","institution_ids":["https://openalex.org/I153512688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086428506","display_name":"Tun\u2010Wen Pai","orcid":"https://orcid.org/0000-0002-2869-4169"},"institutions":[{"id":"https://openalex.org/I153512688","display_name":"National Taiwan Ocean University","ror":"https://ror.org/03bvvnt49","country_code":"TW","type":"education","lineage":["https://openalex.org/I153512688"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tun-Wen Pai","raw_affiliation_strings":["Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","institution_ids":["https://openalex.org/I153512688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013104528","display_name":"Jyh\u2010Fu Jeng","orcid":null},"institutions":[{"id":"https://openalex.org/I153512688","display_name":"National Taiwan Ocean University","ror":"https://ror.org/03bvvnt49","country_code":"TW","type":"education","lineage":["https://openalex.org/I153512688"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jyh-Fu Jeng","raw_affiliation_strings":["Center for Marine Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Marine Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","institution_ids":["https://openalex.org/I153512688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060799491","display_name":"Chin\u2010Hwa Hu","orcid":"https://orcid.org/0000-0001-9582-2303"},"institutions":[{"id":"https://openalex.org/I153512688","display_name":"National Taiwan Ocean University","ror":"https://ror.org/03bvvnt49","country_code":"TW","type":"education","lineage":["https://openalex.org/I153512688"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chin-Hua Hu","raw_affiliation_strings":["Center for Marine Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","Institute of Bioscience and BioTechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Marine Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","institution_ids":["https://openalex.org/I153512688"]},{"raw_affiliation_string":"Institute of Bioscience and BioTechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","institution_ids":["https://openalex.org/I153512688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020855212","display_name":"Wen\u2010Shyong Tzou","orcid":"https://orcid.org/0000-0002-6726-1390"},"institutions":[{"id":"https://openalex.org/I153512688","display_name":"National Taiwan Ocean University","ror":"https://ror.org/03bvvnt49","country_code":"TW","type":"education","lineage":["https://openalex.org/I153512688"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wen-Shyong Tzou","raw_affiliation_strings":["Institute of Bioscience and BioTechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioscience and BioTechnology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C","institution_ids":["https://openalex.org/I153512688"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I153512688"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6950472593307495},{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.5657256841659546},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.5645418763160706},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.5588884949684143},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.5475356578826904},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5462032556533813},{"id":"https://openalex.org/keywords/loop-modeling","display_name":"Loop modeling","score":0.5159873962402344},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5083643794059753},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5041440725326538},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49240219593048096},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4730253219604492},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4351779818534851},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.42934364080429077},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.372342050075531},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35568878054618835},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27080005407333374},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.25291112065315247},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2474309802055359},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19303637742996216},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1498619019985199},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12198460102081299},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.10377177596092224}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6950472593307495},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.5657256841659546},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5645418763160706},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.5588884949684143},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5475356578826904},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5462032556533813},{"id":"https://openalex.org/C45475804","wikidata":"https://www.wikidata.org/wiki/Q6675846","display_name":"Loop modeling","level":4,"score":0.5159873962402344},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5083643794059753},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5041440725326538},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49240219593048096},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4730253219604492},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4351779818534851},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.42934364080429077},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.372342050075531},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35568878054618835},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27080005407333374},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.25291112065315247},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2474309802055359},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19303637742996216},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1498619019985199},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12198460102081299},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.10377177596092224},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-642-03095-6_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-642-03095-6_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W319819633","https://openalex.org/W2007978853","https://openalex.org/W2022058405","https://openalex.org/W2025393502","https://openalex.org/W2049540991","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2076443836","https://openalex.org/W2087064593","https://openalex.org/W2096495474","https://openalex.org/W2105022572","https://openalex.org/W2137015675","https://openalex.org/W2148012276","https://openalex.org/W2148101168","https://openalex.org/W2149758239","https://openalex.org/W2152326664","https://openalex.org/W2158714788","https://openalex.org/W2159266221"],"related_works":["https://openalex.org/W646353556","https://openalex.org/W1989090710","https://openalex.org/W24291664","https://openalex.org/W2398461637","https://openalex.org/W2070955689","https://openalex.org/W2015399150","https://openalex.org/W2009133913","https://openalex.org/W2005647400","https://openalex.org/W2258169709","https://openalex.org/W4386496033"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
