{"id":"https://openalex.org/W2135167116","doi":"https://doi.org/10.1007/s11227-007-0100-1","title":"Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology","display_name":"Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology","publication_year":2007,"publication_date":"2007-02-24","ids":{"openalex":"https://openalex.org/W2135167116","doi":"https://doi.org/10.1007/s11227-007-0100-1","mag":"2135167116"},"language":"en","primary_location":{"id":"doi:10.1007/s11227-007-0100-1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-007-0100-1","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101909486","display_name":"Wei Zhong","orcid":"https://orcid.org/0000-0002-6199-1376"},"institutions":[{"id":"https://openalex.org/I127845322","display_name":"University of South Carolina Upstate","ror":"https://ror.org/00t9hhv14","country_code":"US","type":"education","lineage":["https://openalex.org/I127845322"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Zhong","raw_affiliation_strings":["Division of Math and Computer Science, University of South Carolina Upstate, Spartanburg, SC, 29303, USA","Division of Math and Computer Science, University of South Carolina Upstate, Spartanburg, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Math and Computer Science, University of South Carolina Upstate, Spartanburg, SC, 29303, USA","institution_ids":["https://openalex.org/I127845322"]},{"raw_affiliation_string":"Division of Math and Computer Science, University of South Carolina Upstate, Spartanburg, USA","institution_ids":["https://openalex.org/I127845322"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088893132","display_name":"G\u00fcl\u015fah Altun","orcid":"https://orcid.org/0000-0001-9596-6913"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gulsah Altun","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, 30303, USA","Department of Computer Science, Georgia State University, Atlanta, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, 30303, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101131112","display_name":"Xinmin Tian","orcid":null},"institutions":[{"id":"https://openalex.org/I1343180700","display_name":"Intel (United States)","ror":"https://ror.org/01ek73717","country_code":"US","type":"company","lineage":["https://openalex.org/I1343180700"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinmin Tian","raw_affiliation_strings":["Software Solution Group, Intel Corporation, Santa Clara, CA, USA","Software Solution Group, Intel Corporation, Santa Clara, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Software Solution Group, Intel Corporation, Santa Clara, CA, USA","institution_ids":["https://openalex.org/I1343180700"]},{"raw_affiliation_string":"Software Solution Group, Intel Corporation, Santa Clara, USA","institution_ids":["https://openalex.org/I1343180700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007378854","display_name":"Robert W. Harrison","orcid":"https://orcid.org/0000-0003-2449-1214"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Harrison","raw_affiliation_strings":["Department of Biology, Georgia State University, Atlanta, GA, 30303, USA","Department of Computer Science, Georgia State University, Atlanta, GA, 30303, USA","Department of Biology, Georgia State University, Atlanta, USA","Department of Computer Science, Georgia State University, Atlanta, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Georgia State University, Atlanta, GA, 30303, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, 30303, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Department of Biology, Georgia State University, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012396051","display_name":"Phang C. Tai","orcid":"https://orcid.org/0000-0003-4217-9531"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phang C. Tai","raw_affiliation_strings":["Department of Biology, Georgia State University, Atlanta, GA, 30303, USA","Department of Biology, Georgia State University, Atlanta, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Georgia State University, Atlanta, GA, 30303, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Department of Biology, Georgia State University, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yi Pan","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, 30303, USA","Department of Computer Science, Georgia State University, Atlanta, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, 30303, USA","institution_ids":["https://openalex.org/I181565077"]},{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, USA","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101465265"],"corresponding_institution_ids":["https://openalex.org/I181565077"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.3997,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.63136234,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"41","issue":"1","first_page":"1","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.9330495595932007},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8505841493606567},{"id":"https://openalex.org/keywords/posix-threads","display_name":"POSIX Threads","score":0.8142274022102356},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7321708798408508},{"id":"https://openalex.org/keywords/multithreading","display_name":"Multithreading","score":0.6728147268295288},{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.6711052060127258},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5020456314086914},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.46904119849205017},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.43182986974716187},{"id":"https://openalex.org/keywords/parallel-algorithm","display_name":"Parallel algorithm","score":0.4229496121406555},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3243764638900757},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30879896879196167},{"id":"https://openalex.org/keywords/thread","display_name":"Thread (computing)","score":0.25855007767677307},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.12003922462463379},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0817575454711914}],"concepts":[{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.9330495595932007},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8505841493606567},{"id":"https://openalex.org/C41138395","wikidata":"https://www.wikidata.org/wiki/Q928112","display_name":"POSIX Threads","level":3,"score":0.8142274022102356},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7321708798408508},{"id":"https://openalex.org/C201410400","wikidata":"https://www.wikidata.org/wiki/Q1064412","display_name":"Multithreading","level":3,"score":0.6728147268295288},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.6711052060127258},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5020456314086914},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.46904119849205017},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.43182986974716187},{"id":"https://openalex.org/C120373497","wikidata":"https://www.wikidata.org/wiki/Q1087987","display_name":"Parallel algorithm","level":2,"score":0.4229496121406555},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3243764638900757},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30879896879196167},{"id":"https://openalex.org/C138101251","wikidata":"https://www.wikidata.org/wiki/Q213092","display_name":"Thread (computing)","level":2,"score":0.25855007767677307},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.12003922462463379},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0817575454711914},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s11227-007-0100-1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11227-007-0100-1","pdf_url":null,"source":{"id":"https://openalex.org/S32326811","display_name":"The Journal of Supercomputing","issn_l":"0920-8542","issn":["0920-8542","1573-0484"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Journal of Supercomputing","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.110.9947","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.110.9947","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.gsu.edu/~cscyip/papers/TJS07.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5099999904632568,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320306352","display_name":"Georgia Cancer Coalition","ror":"https://ror.org/0009gvn90"},{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320310224","display_name":"Georgia Research Alliance","ror":"https://ror.org/030689123"},{"id":"https://openalex.org/F4320332564","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W86972778","https://openalex.org/W144473077","https://openalex.org/W1538556053","https://openalex.org/W1547274036","https://openalex.org/W1554398046","https://openalex.org/W1556859836","https://openalex.org/W1904770629","https://openalex.org/W1966333039","https://openalex.org/W1985818354","https://openalex.org/W2013136212","https://openalex.org/W2069085969","https://openalex.org/W2100890997","https://openalex.org/W2104972430","https://openalex.org/W2119423166","https://openalex.org/W2121739905","https://openalex.org/W2122945697","https://openalex.org/W2135190381","https://openalex.org/W2143210482","https://openalex.org/W2158714788","https://openalex.org/W2169040626","https://openalex.org/W2249344705","https://openalex.org/W2480370285","https://openalex.org/W2586806585","https://openalex.org/W3107487637","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W3089117407","https://openalex.org/W2023373638","https://openalex.org/W4294310504","https://openalex.org/W2384903348","https://openalex.org/W2338363223","https://openalex.org/W4253890856","https://openalex.org/W2369027488","https://openalex.org/W2650626006","https://openalex.org/W160921400","https://openalex.org/W76998001"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}