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ORCIDNeuroinformatics, Volume 9
Volume 9, Number 1, March 2011
- John L. Baker, Giorgio A. Ascoli:
Tracking the Source of Quantitative Knowledge in Neuroscience: A Neuroinformatics Role for Computational Models. 1-2 - Roberto Santana, Concha Bielza
, Pedro Larrañaga:
Optimizing Brain Networks Topologies Using Multi-objective Evolutionary Computation. 3-19 - Mei-Yu Hsiao, Chien-Chung Chen, Jyh-Horng Chen:
BrainKnowledge: A Human Brain Function Mapping Knowledge-Base System. 21-38 - Bitao Shi, Jennifer Bourne, Kristen M. Harris:
SynapticDB, Effective Web-based Management and Sharing of Data from Serial Section Electron Microscopy. 39-57 - Min Wang, Hehuang Xie, Wendy Stellpflug, Veena Rajaram, Maria F. Bonaldo, Stewart Goldman, Tadanori Tomita, Marcelo Bento Soares:
BTECH: A Platform to Integrate Genomic, Transcriptomic and Epigenomic Alterations in Brain Tumors. 59-67 - Alark Joshi, Dustin Scheinost, Hirohito Okuda, Dominique Belhachemi, Isabella Murphy, Lawrence H. Staib, Xenophon Papademetris:
Unified Framework for Development, Deployment and Robust Testing of Neuroimaging Algorithms. 69-84 - Isabella Castiglioni, Barbara Canesi, Andrea Schenone, Marco Fato, Daniela Perani, Maria Carla Gilardi:
Grid-distributed Statistical Parametric Mapping of SPECT and PET Neuroimages. 85-90 - Hermann Cuntz, Friedrich Forstner, Alexander Borst, Michael Häusser:
The TREES Toolbox - Probing the Basis of Axonal and Dendritic Branching. 91-96
Volume 9, Numbers 2-3, September 2011
- Karel Svoboda:
The Past, Present, and Future of Single Neuron Reconstruction. 97-98 - Yuan Liu:
The DIADEM and Beyond. 99-102 - Hanchuan Peng, Fuhui Long, Ting Zhao, Eugene W. Myers:
Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions. 103-105 - Hai Yan He, Hollis T. Cline:
Diadem X: Automated 4 Dimensional Analysis of Morphological Data. 107-112 - Izumi Sugihara:
Bright Field Neuronal Preparation Optimized for Automatic Computerized Reconstruction, a Case with Cerebellar Climbing Fibers. 113-118 - Stephen L. Senft:
A Brief History of Neuronal Reconstruction. 119-128 - Alison J. Canty, Vincenzo De Paola:
Axonal Reconstructions Going Live. 129-131 - James R. Kozloski:
Automated Reconstruction of Neural Tissue and the Role of Large-Scale Simulation. 133-142 - Kerry M. Brown, Germán Barrionuevo, Alison J. Canty, Vincenzo De Paola, Judith A. Hirsch, Gregory S. X. E. Jefferis, Ju Lu, Marjolein Snippe, Izumi Sugihara, Giorgio A. Ascoli:
The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions. 143-157 - Ju Lu:
Neuronal Tracing for Connectomic Studies. 159-166 - Rodney J. Douglas, Kevan A. C. Martin:
What's Black and White About the Grey Matter? 167-179 - Erhan Bas, Deniz Erdogmus:
Principal Curves as Skeletons of Tubular Objects - Locally Characterizing the Structures of Axons. 181-191 - Yu Wang, Arunachalam Narayanaswamy, Chia-Ling Tsai, Badrinath Roysam:
A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake. 193-217 - Arunachalam Narayanaswamy, Yu Wang, Badrinath Roysam:
3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors. 219-231 - Todd A. Gillette, Kerry M. Brown, Giorgio A. Ascoli:
The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron. 233-245 - Ting Zhao, Jun Xie, Fernando Amat, Nathan G. Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long, Eugene W. Myers:
Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models. 247-261 - Paarth Chothani, Vivek Mehta, Armen Stepanyants:
Automated Tracing of Neurites from Light Microscopy Stacks of Images. 263-278 - Engin Türetken, Germán González, Christian Blum, Pascal Fua:
Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors. 279-302 - Todd A. Gillette, Kerry M. Brown, Karel Svoboda, Yuan Liu, Giorgio A. Ascoli:
DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction. 303-304 - Jonathan Luisi, Arunachalam Narayanaswamy, Zachary Galbreath, Badrinath Roysam:
The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions. 305-315
Volume 9, Number 4, December 2011
- David N. Kennedy, Giorgio A. Ascoli, Erik De Schutter:
Next Steps in Data Publishing. 317-320 - Elissaios Karageorgiou, S. Charles Schulz, Randy L. Gollub, Nancy Andreasen, Beng-Choon Ho, John Lauriello, Vince D. Calhoun, Henry Jeremy Bockholt, Scott R. Sponheim, Apostolos P. Georgopoulos:
Neuropsychological Testing and Structural Magnetic Resonance Imaging as Diagnostic Biomarkers Early in the Course of Schizophrenia and Related Psychoses. 321-333 - Kourosh Jafari-Khouzani, Kost V. Elisevich, Suresh Patel, Hamid Soltanian-Zadeh:
Dataset of Magnetic Resonance Images of Nonepileptic Subjects and Temporal Lobe Epilepsy Patients for Validation of Hippocampal Segmentation Techniques. 335-346 - Pedro L. López-Cruz, Concha Bielza, Pedro Larrañaga, Ruth Benavides-Piccione, Javier DeFelipe:
Models and Simulation of 3D Neuronal Dendritic Trees Using Bayesian Networks. 347-369 - Jack L. Lancaster, D. Reese McKay, Matthew D. Cykowski, Michael J. Martinez, Xi Tan, Sunil Valaparla, Yi Zhang, Peter T. Fox:
Automated Analysis of Fundamental Features of Brain Structures. 371-380 - Brian B. Avants, Nicholas J. Tustison, Jue Wu, Philip A. Cook, James C. Gee:
An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. 381-400 - Szymon Leski, Klas H. Pettersen, Beth Tunstall, Gaute T. Einevoll, John Gigg, Daniel K. Wójcik:
Inverse Current Source Density Method in Two Dimensions: Inferring Neural Activation from Multielectrode Recordings. 401-425 - Maurizio Bergamino, Laura Saitta, Lucio Castellan, Gianluigi Zona, Bruno Bartolini, Renato Spaziante, Luca Roccatagliata:
Cerebral Aneurysms Database, a New Free Database for Intracranial Aneurysms. 427-430
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