pyNBS: a Python implementation for network-based stratification of tumor mutations.

Daniel E. Carlin https://orcid.org/0000-0001-5075-9486 https://www.wikidata.org/entity/Q87902663

Justin K. Huang Tongqiu Jia Daniel E. Carlin Trey Ideker pyNBS: a Python implementation for network-based stratification of tumor mutations. 2859-2861 2018 34 Bioinform. 16 https://doi.org/10.1093/bioinformatics/bty186 https://www.wikidata.org/entity/Q88244625 db/journals/bioinformatics/bioinformatics34.html#HuangJCI18

Daniel E. Carlin Barry Demchak Dexter Pratt Eric Sage Trey Ideker Network propagation in the cytoscape cyberinfrastructure. 2017 13 PLoS Comput. Biol. 10 https://doi.org/10.1371/journal.pcbi.1005598 https://www.wikidata.org/entity/Q42375668 db/journals/ploscb/ploscb13.html#CarlinDPSI17

Daniel E. Carlin Kassi Kosnicki Sara Garamszegi Trey Ideker Helga Thorvaldsdóttir Michael Reich Jill P. Mesirov A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression. 784- 2017 6 F1000Research https://doi.org/10.12688/f1000research.11616.1 db/journals/f1000research/f1000research6.html#CarlinKGITRM17

Artem Sokolov Daniel E. Carlin Evan O. Paull Robert Baertsch Joshua M. Stuart Pathway-Based Genomics Prediction using Generalized Elastic Net. 2016 12 PLoS Comput. Biol. 3 https://doi.org/10.1371/journal.pcbi.1004790 https://www.wikidata.org/entity/Q28550614 db/journals/ploscb/ploscb12.html#SokolovCPBS16

Daniel E. Carlin Computational Evaluation and Derivation of biological Networks in cancer and STEM cells. 2014 University of California, Santa Cruz, USA http://www.escholarship.org/uc/item/8cg36268 http://n2t.net/ark:/13030/m5ck0h6j https://www.base-search.net/Record/7a2f936a92c40a4d6a69c47359c2b29fe9a1431c7ed02a145c6aaf05ab7bac29 base-search.net (ftcdlib:qt8cg36268)

Evan O. Paull Daniel E. Carlin Mario Niepel Peter K. Sorger David Haussler Joshua M. Stuart Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE). 2757-2764 2013 29 Bioinform. 21 https://doi.org/10.1093/bioinformatics/btt471 https://www.wikidata.org/entity/Q37236850 db/journals/bioinformatics/bioinformatics29.html#PaullCNSHS13

Robert Baertsch Barry Demchak Sara Garamszegi David Haussler Justin K. Huang Trey Ideker Tongqiu Jia Kassi Kosnicki Jill P. Mesirov Mario Niepel Evan O. Paull Dexter Pratt Michael Reich Eric Sage Artem Sokolov Peter K. Sorger Joshua M. Stuart Helga Thorvaldsdóttir