Enhancing OCT patch-based segmentation with improved GAN data augmentation and semi-supervised learning.

Michael J. Collins 0001 http://staff.qut.edu.au/staff/collinmj/ https://orcid.org/0000-0001-5226-5498 https://www.wikidata.org/entity/Q87387669 Queensland University of Technology, School of Optometry and Vision Science Michael J. Collins Michael J. Collins 0002 University of Calgary, Department of Geomatics Engineering York University, Toronto, ON, Canada http://www.geomatics.ucalgary.ca/MichaelCollins https://orcid.org/0000-0003-0997-1527 Michael J. Collins 0003 Sandia National Laboratories, Albuquerque, USA Department of Computer Science, University of New Mexico, USA Michael J. Collins 0004 Ohio State University, Department of Electronic Engineering Michael J. Collins 0005 Google Research, New York, NY, USA

Jason Kugelman David Alonso-Caneiro Scott A. Read Stephen J. Vincent Michael J. Collins 0001 Enhancing OCT patch-based segmentation with improved GAN data augmentation and semi-supervised learning. 18087-18105 2024 October 36 Neural Comput. Appl. 29 https://doi.org/10.1007/s00521-024-10044-1 db/journals/nca/nca36.html#KugelmanARVC24 streams/journals/nca

Mahdi Heravian Shandiz David Alonso-Caneiro Scott A. Read Michael J. Collins 0001 A Variational Autoencoder Approach for Blink Detection in Mobile Eye Tracking Devices. 419-426 2024 DICTA https://doi.org/10.1109/DICTA63115.2024.00068 conf/dicta/2024 db/conf/dicta/dicta2024.html#ShandizAR024 Samaneh Hashemi David Alonso-Caneiro Michael J. Collins 0001 Scott A. Read Zhiyong Li Speckle Feature Classification for Optical Coherence Tomography Flow Rate Assessment. 442-448 2024 DICTA https://doi.org/10.1109/DICTA63115.2024.00071 conf/dicta/2024 db/conf/dicta/dicta2024.html#HashemiA0RL24

Yoel F. Garcia-Marin David Alonso-Caneiro Damien Fisher Stephen J. Vincent Michael J. Collins 0001 Patch-based CNN for corneal segmentation of AS-OCT images: Effect of the number of classes and image quality upon performance. 106342 2023 152 Comput. Biol. Medicine https://doi.org/10.1016/j.compbiomed.2022.106342 db/journals/cbm/cbm152.html#Garcia-MarinAFV23

Jason Kugelman David Alonso-Caneiro Scott A. Read Stephen J. Vincent Michael J. Collins 0001 Enhanced OCT chorio-retinal segmentation in low-data settings with semi-supervised GAN augmentation using cross-localisation. 103852 2023 December 237 Comput. Vis. Image Underst. https://doi.org/10.1016/j.cviu.2023.103852 db/journals/cviu/cviu237.html#KugelmanARVC23

Ignacio A. Viedma David Alonso-Caneiro Scott A. Read Michael J. Collins 0001 Deep learning in retinal optical coherence tomography (OCT): A comprehensive survey. 247-264 2022 507 Neurocomputing https://doi.org/10.1016/j.neucom.2022.08.021 db/journals/ijon/ijon507.html#ViedmaARC22

Ignacio A. Viedma David Alonso-Caneiro Scott A. Read Michael J. Collins 0001 OCT Retinal and Choroidal Layer Instance Segmentation Using Mask R-CNN. 2016 2022 22 Sensors 5 https://doi.org/10.3390/s22052016 db/journals/sensors/sensors22.html#ViedmaARC22

Thomas Coppin Douglas W. Palmer Krishan Rana Donald G. Dansereau Michael J. Collins 0001 David A. Atchison Jonathan Roberts 0001 Ross Crawford Anjali Tumkur Jaiprakash Design of a focused light field fundus camera for retinal imaging. 116869 2022 109 Signal Process. Image Commun. https://doi.org/10.1016/j.image.2022.116869 db/journals/spic/spic109.html#CoppinPRDCARCJ22

Jason Kugelman David Alonso-Caneiro Scott A. Read Stephen J. Vincent Fred K. Chen Michael J. Collins 0001 Data augmentation for patch-based OCT chorio-retinal segmentation using generative adversarial networks. 7393-7408 2021 33 Neural Comput. Appl. 13 https://doi.org/10.1007/s00521-021-05826-w db/journals/nca/nca33.html#KugelmanARVCC21

David Alonso-Caneiro Jason Kugelman Janelle Tong Michael Kalloniatis Fred K. Chen Scott A. Read Michael J. Collins 0001 Use of uncertainty quantification as a surrogate for layer segmentation error in Stargardt disease retinal OCT images. 1-8 2021 DICTA https://doi.org/10.1109/DICTA52665.2021.9647154 conf/dicta/2021 db/conf/dicta/dicta2021.html#Alonso-CaneiroK21 Jason Kugelman David Alonso-Caneiro Scott A. Read Stephen J. Vincent Michael J. Collins 0001 OCT chorio-retinal segmentation with adversarial loss. 1-8 2021 DICTA https://doi.org/10.1109/DICTA52665.2021.9647099 conf/dicta/2021 db/conf/dicta/dicta2021.html#KugelmanARVC21 Ignacio A. Viedma David Alonso-Caneiro Scott A. Read Michael J. Collins 0001 OCT retinal image-to-image translation: Analysing the use of CycleGAN to improve retinal boundary semantic segmentation. 1-8 2021 DICTA https://doi.org/10.1109/DICTA52665.2021.9647266 conf/dicta/2021 db/conf/dicta/dicta2021.html#ViedmaARC21

Jason Kugelman David Alonso-Caneiro Scott A. Read Stephen J. Vincent Fred K. Chen Michael J. Collins 0001 Effect of Altered OCT Image Quality on Deep Learning Boundary Segmentation. 43537-43553 2020 8 IEEE Access https://doi.org/10.1109/ACCESS.2020.2977355 db/journals/access/access8.html#KugelmanARVCC20

Jason Kugelman David Alonso-Caneiro Scott A. Read Stephen J. Vincent Fred K. Chen Michael J. Collins 0001 Dual image and mask synthesis with GANs for semantic segmentation in optical coherence tomography. 1-8 2020 DICTA https://doi.org/10.1109/DICTA51227.2020.9363402 conf/dicta/2020 db/conf/dicta/dicta2020.html#KugelmanARVC020 Jason Kugelman David Alonso-Caneiro Scott A. Read Stephen J. Vincent Fred K. Chen Michael J. Collins 0001 Constructing Synthetic Chorio-Retinal Patches using Generative Adversarial Networks. 1-8 2019 DICTA https://doi.org/10.1109/DICTA47822.2019.8946089 conf/dicta/2019 db/conf/dicta/dicta2019.html#KugelmanARVC019 David Alonso-Caneiro Jason Kugelman Jared Hamwood Scott A. Read Stephen J. Vincent Fred K. Chen Michael J. Collins 0001 Automatic Retinal and Choroidal Boundary Segmentation in OCT Images Using Patch-Based Supervised Machine Learning Methods. 215-228 2018 ACCV Workshops https://doi.org/10.1007/978-3-030-21074-8_17 conf/accv/2018w db/conf/accv/accv2018w.html#Alonso-CaneiroK18

Michael Muma D. Robert Iskander Michael J. Collins 0001 The Role of Cardiopulmonary Signals in the Dynamics of the Eye's Wavefront Aberrations. 373-383 2010 57 IEEE Trans. Biomed. Eng. 2 https://doi.org/10.1109/TBME.2009.2032531 https://www.wikidata.org/entity/Q84595638 db/journals/tbe/tbe57.html#MumaIC10

Martin Schneider D. Robert Iskander Michael J. Collins 0001 Modeling Corneal Surfaces With Rational Functions for High-Speed Videokeratoscopy Data Compression. 493-499 2009 56 IEEE Trans. Biomed. Eng. 2 https://doi.org/10.1109/TBME.2008.2006019 https://www.wikidata.org/entity/Q33416301 db/journals/tbe/tbe56.html#SchneiderIC09

Weaam Alkhaldi D. Robert Iskander Abdelhak M. Zoubir Michael J. Collins 0001 Enhancing the Standard Operating Range of a Placido Disk Videokeratoscope for Corneal Surface Estimation. 800-809 2009 56 IEEE Trans. Biomed. Eng. 3 https://doi.org/10.1109/TBME.2008.2005997 https://www.wikidata.org/entity/Q51837792 db/journals/tbe/tbe56.html#AlkhaldiIZC09

David Alonso-Caneiro D. Robert Iskander Michael J. Collins 0001 Assessment of Tear Film Surface Quality Using Dynamic-Area High-Speed Videokeratoscopy. 1473-1481 2009 56 IEEE Trans. Biomed. Eng. 5 https://doi.org/10.1109/TBME.2008.2011993 https://www.wikidata.org/entity/Q51853736 db/journals/tbe/tbe56.html#Alonso-CaneiroIC09

Alyra J. Shaw Brett A. Davis Michael J. Collins 0001 Leo G. Carney A Technique to Measure Eyelid Pressure Using Piezoresistive Sensors. 2512-2517 2009 56 IEEE Trans. Biomed. Eng. 10 https://doi.org/10.1109/TBME.2009.2022550 https://www.wikidata.org/entity/Q83870172 db/journals/tbe/tbe56.html#ShawDCC09

David Alonso-Caneiro D. Robert Iskander Michael J. Collins 0001 Estimating Corneal Surface Topography in Videokeratoscopy in the Presence of Strong Signal Interference. 2381-2387 2008 55 IEEE Trans. Biomed. Eng. 10 https://doi.org/10.1109/TBME.2008.923766 https://www.wikidata.org/entity/Q40038553 db/journals/tbe/tbe55.html#Alonso-CaneiroIC08

David Alonso-Caneiro D. Robert Iskander Michael J. Collins 0001 Computationally efficient interference detection in videokeratoscopy images. 486-490 2008 MMSP https://doi.org/10.1109/MMSP.2008.4665127 conf/mmsp/2008 db/conf/mmsp/mmsp2008.html#Alonso-CaneiroIC08

D. Robert Iskander Michael J. Collins 0001 Brett A. Davis Evaluating tear film stability in the human eye with high-speed videokeratoscopy. 1939-1949 2005 52 IEEE Trans. Biomed. Eng. 11 https://doi.org/10.1109/TBME.2005.856253 https://www.wikidata.org/entity/Q39736111 db/journals/tbe/tbe52.html#IskanderCD05

D. Robert Iskander Michael J. Collins 0001 Siegfried Mioschek Martin Trunk Automatic pupillometry from digital images. 1619-1627 2004 51 IEEE Trans. Biomed. Eng. 9 https://doi.org/10.1109/TBME.2004.827546 https://www.wikidata.org/entity/Q39695111 db/journals/tbe/tbe51.html#IskanderCMT04

D. Robert Iskander Michael J. Collins 0001 Mark R. Morelande Mingxia Zhu Analyzing the dynamic wavefront aberrations in the human eye. 1969-1980 2004 51 IEEE Trans. Biomed. Eng. 11 https://doi.org/10.1109/TBME.2004.834254 https://www.wikidata.org/entity/Q80986324 db/journals/tbe/tbe51.html#IskanderCMZ04

D. Robert Iskander Mark R. Morelande Michael J. Collins 0001 Tobias Buehren A refined bootstrap method for estimating the Zernike polynomial model order for corneal surfaces. 2203-2206 2004 51 IEEE Trans. Biomed. Eng. 12 https://doi.org/10.1109/TBME.2004.834252 https://www.wikidata.org/entity/Q53629311 db/journals/tbe/tbe51.html#IskanderMCB04

D. Robert Iskander Mark R. Morelande Michael J. Collins 0001 Brett A. Davis Modeling of corneal surfaces with radial polynomials. 320-328 2002 49 IEEE Trans. Biomed. Eng. 4 https://doi.org/10.1109/10.991159 https://www.wikidata.org/entity/Q43953399 db/journals/tbe/tbe49.html#IskanderMCD02

Mark R. Morelande D. Robert Iskander Michael J. Collins 0001 Ross Franklin Automatic estimation of the corneal limbus in videokeratoscopy. 1617-1625 2002 49 IEEE Trans. Biomed. Eng. 12 https://doi.org/10.1109/TBME.2002.805481 https://www.wikidata.org/entity/Q52023710 db/journals/tbe/tbe49.html#MorelandeICF02

D. Robert Iskander Michael J. Collins 0001 Brett A. Davis Optimal modeling of corneal surfaces with Zernike polynomials. 87-95 2001 48 IEEE Trans. Biomed. Eng. 1 https://doi.org/10.1109/10.900255 https://www.wikidata.org/entity/Q73580298 db/journals/tbe/tbe48.html#IskanderCD01

Paul Sulisz Michael J. Collins 0001 Brett A. Davis D. Robert Iskander Integrated DSP control and image acquisition system for measuring monochromatic aberrations in human eyes. 355-358 1999 ISSPA https://doi.org/10.1109/ISSPA.1999.818185 conf/isspa/1999 db/conf/isspa/isspa1999.html#SuliszCDI99 Christopher Chao D. Robert Iskander Michael J. Collins 0001 Brett A. Davis Mohammed Bennamoun Dynamic retinal image reconstruction of the human eye. 919-922 1999 ISSPA https://doi.org/10.1109/ISSPA.1999.815821 https://www.wikidata.org/entity/Q62791198 conf/isspa/1999 db/conf/isspa/isspa1999.html#ChaoI0DB99 Weaam Alkhaldi David Alonso-Caneiro David A. Atchison Mohammed Bennamoun Tobias Buehren Leo G. Carney Christopher Chao Fred K. Chen Thomas Coppin Ross Crawford Donald G. Dansereau Brett A. Davis Damien Fisher Ross Franklin Yoel F. Garcia-Marin Jared Hamwood Samaneh Hashemi D. Robert Iskander Anjali Tumkur Jaiprakash Michael Kalloniatis Jason Kugelman Zhiyong Li Siegfried Mioschek Mark R. Morelande Michael Muma Douglas W. Palmer Krishan Rana Scott A. Read Jonathan Roberts 0001 Martin Schneider Mahdi Heravian Shandiz Alyra J. Shaw Paul Sulisz Janelle Tong Martin Trunk Ignacio A. Viedma Stephen J. Vincent Mingxia Zhu Abdelhak M. Zoubir