Towards a Standard Process Management Infrastructure for Workflows Using Python.

Matthew B. Baker Wael R. Elwasif Thomas J. Naughton Matthew B. Baker Towards a Standard Process Management Infrastructure for Workflows Using Python. 523-534 2022 PDCAT https://doi.org/10.1007/978-3-031-29927-8_40 conf/pdcat/2022 db/conf/pdcat/pdcat2022.html#ElwasifNB22 Stephen W. Poole Oscar R. Hernandez Matthew B. Baker Tony Curtis OpenSHMEM and Related Technologies. OpenSHMEM in the Era of Exascale and Smart Networks - 8th Workshop on OpenSHMEM and Related Technologies, OpenSHMEM 2021, Virtual Event, September 14-16, 2021, Revised Selected Papers OpenSHMEM Springer 2022 Lecture Notes in Computer Science 13159 978-3-031-04887-6 978-3-031-04888-3 https://doi.org/10.1007/978-3-031-04888-3 db/conf/openshmem/openshmem2021.html

Josh Vincent Vermaas Ada Sedova Matthew B. Baker Swen Boehm David M. Rogers 0001 Jeff Larkin Jens Glaser Micholas Dean Smith Oscar R. Hernandez Jeremy C. Smith Supercomputing Pipelines Search for Therapeutics Against COVID-19. 7-16 2021 23 Comput. Sci. Eng. 1 https://doi.org/10.1109/MCSE.2020.3036540 https://www.wikidata.org/entity/Q113312094 db/journals/cse/cse23.html#VermaasSBBRLGSH21

Jens Glaser Josh Vincent Vermaas David M. Rogers 0001 Jeff Larkin Scott LeGrand Swen Boehm Matthew B. Baker Aaron Scheinberg Andreas F. Tillack Mathialakan Thavappiragasam Ada Sedova Oscar R. Hernandez High-throughput virtual laboratory for drug discovery using massive datasets. 2021 35 Int. J. High Perform. Comput. Appl. 5 https://doi.org/10.1177/10943420211001565 https://www.wikidata.org/entity/Q115027735 db/journals/ijhpca/ijhpca35.html#GlaserVRLLBBSTT21

Jens Glaser Felipe Aramburú William Malpica Benjamín Hernández Matthew B. Baker Rodrigo Aramburú Scaling SQL to the Supercomputer for Interactive Analysis of Simulation Data. 327-339 2021 SMC https://doi.org/10.1007/978-3-030-96498-6_19 conf/smc2/2021 db/conf/smc2/smc2021.html#GlaserAMHBA21

Atanu Acharya Rupesh Agarwal Matthew B. Baker Jérôme Baudry Debsindhu Bhowmik Swen Böhm Kendall G. Byler Sam Yen-Chi Chen Leighton Coates Connor J. Cooper Omar Demerdash Isabella Daidone John D. Eblen Sally R. Ellingson Stefano Forli Jens Glaser James C. Gumbart John A. Gunnels Oscar R. Hernandez Stephan Irle Daniel W. Kneller Andrey Kovalevsky Jeffrey M. Larkin Travis J. Lawrence Scott LeGrand Shih-Hsien Liu Julie C. Mitchell Gilchan Park Jerry M. Parks Anna Pavlova Loukas Petridis Duncan Poole Line Pouchard Arvind Ramanathan David M. Rogers 0001 Diogo Santos-Martins Aaron Scheinberg Ada Sedova Yue Shen Jeremy C. Smith Micholas Dean Smith Carlos Soto 0003 Aristides Tsaris Mathialakan Thavappiragasam Andreas F. Tillack Josh Vincent Vermaas Van Quan Vuong Junqi Yin Shinjae Yoo Mai Zahran Laura Zanetti Polzi Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. 5832-5852 2020 60 J. Chem. Inf. Model. 12 https://doi.org/10.1021/acs.jcim.0c01010 https://www.wikidata.org/entity/Q104483456 db/journals/jcisd/jcisd60.html#AcharyaABBBBBCC20

Matthew B. Baker Oscar R. Hernandez Jeffrey Young 0001 Co-designing OpenMP Features Using OMPT and Simulation Tools. 181-194 2020 IWOMP https://doi.org/10.1007/978-3-030-58144-2_12 conf/iwomp/2020 db/conf/iwomp/iwomp2020.html#BakerHY20

Verónica G. Vergara Larrea Michael J. Brim Wayne Joubert Swen Boehm Matthew B. Baker Oscar R. Hernandez Sarp Oral James Simmons Don Maxwell Are we witnessing the spectre of an HPC meltdown? 2019 31 Concurr. Comput. Pract. Exp. 16 https://doi.org/10.1002/cpe.5020 https://www.wikidata.org/entity/Q125681529 db/journals/concurrency/concurrency31.html#LarreaBJBBHOSM19

John R. Ossyra Ada Sedova Matthew B. Baker Jeremy C. Smith Highly Interactive, Steered Scientific Workflows on HPC Systems: Optimizing Design Solutions. 514-527 2019 ISC High Performance (Workshops) https://doi.org/10.1007/978-3-030-34356-9_39 conf/supercomputer/2019w db/conf/supercomputer/isc2019w.html#OssyraSBS19 Thomas J. Naughton Ferrol Aderholdt Matthew B. Baker Swaroop Pophale Manjunath Gorentla Venkata Neena Imam Oak Ridge OpenSHMEM Benchmark Suite. 202-216 2018 OpenSHMEM https://doi.org/10.1007/978-3-030-04918-8_13 conf/openshmem/2018 db/conf/openshmem/openshmem2018.html#NaughtonABPVI18 Swen Boehm Swaroop Pophale Matthew B. Baker Manjunath Gorentla Venkata Merged Requests for Better Performance and Productivity in Multithreaded OpenSHMEM. 35-49 2017 OpenSHMEM https://doi.org/10.1007/978-3-319-73814-7_3 conf/openshmem/2017 db/conf/openshmem/openshmem2017.html#BoehmPBV17 Aurélien Bouteiller Swaroop Pophale Swen Boehm Matthew B. Baker Manjunath Gorentla Venkata Evaluating Contexts in OpenSHMEM-X Reference Implementation. 50-62 2017 OpenSHMEM https://doi.org/10.1007/978-3-319-73814-7_4 conf/openshmem/2017 db/conf/openshmem/openshmem2017.html#BouteillerPBBV17 Matthew B. Baker Ferrol Aderholdt Manjunath Gorentla Venkata Pavel Shamis OpenSHMEM-UCX: Evaluation of UCX for Implementing OpenSHMEM Programming Model. 114-130 2016 OpenSHMEM https://doi.org/10.1007/978-3-319-50995-2_8 conf/openshmem/2016 db/conf/openshmem/openshmem2016.html#BakerAVS16 Pavel Shamis Manjunath Gorentla Venkata M. Graham Lopez Matthew B. Baker Oscar R. Hernandez Yossi Itigin Mike Dubman Gilad Shainer Richard L. Graham Liran Liss Yiftah Shahar Sreeram Potluri Davide Rossetti Donald Becker Duncan Poole Christopher Lamb 0001 Sameer Kumar 0001 Craig B. Stunkel George Bosilca Aurélien Bouteiller UCX: An Open Source Framework for HPC Network APIs and Beyond. 40-43 2015 Hot Interconnects https://doi.org/10.1109/HOTI.2015.13 https://doi.ieeecomputersociety.org/10.1109/HOTI.2015.13 conf/hoti/2015 db/conf/hoti/hoti2015.html#ShamisVLBHIDSGL15 Sreeram Potluri Davide Rossetti Donald Becker Duncan Poole Manjunath Gorentla Venkata Oscar R. Hernandez Pavel Shamis M. Graham Lopez Matthew B. Baker Wendy Poole Exploring OpenSHMEM Model to Program GPU-based Extreme-Scale Systems. 18-35 2015 OpenSHMEM https://doi.org/10.1007/978-3-319-26428-8_2 conf/openshmem/2015 db/conf/openshmem/openshmem2015.html#PotluriRBPVHSLB15 Matthew B. Baker Aaron Welch Manjunath Gorentla Venkata Parallelizing the Smith-Waterman Algorithm Using OpenSHMEM and MPI-3 One-Sided Interfaces. 178-191 2015 OpenSHMEM https://doi.org/10.1007/978-3-319-26428-8_12 conf/openshmem/2015 db/conf/openshmem/openshmem2015.html#BakerWV15 Matthew B. Baker Swaroop Pophale Jean-Charles Vasnier Haoqiang Jin Oscar R. Hernandez Hybrid Programming Using OpenSHMEM and OpenACC. 74-89 2014 OpenSHMEM https://doi.org/10.1007/978-3-319-05215-1_6 conf/openshmem/2014 db/conf/openshmem/openshmem2014.html#BakerPVJH14 Atanu Acharya Ferrol Aderholdt Rupesh Agarwal Felipe Aramburú Rodrigo Aramburú Jérôme Baudry Donald Becker Debsindhu Bhowmik Swen BöhmSwen Boehm George Bosilca Aurelien BouteillerAurélien Bouteiller Michael J. Brim Kendall G. Byler Sam Yen-Chi Chen Leighton Coates Connor J. Cooper Tony Curtis Isabella Daidone Omar Demerdash Mike Dubman John D. Eblen Sally R. Ellingson Wael R. Elwasif Stefano Forli Jens Glaser Richard L. Graham James C. Gumbart John A. Gunnels Benjamín Hernández Oscar R. Hernandez Neena Imam Stephan Irle Yossi Itigin Haoqiang Jin Wayne Joubert Daniel W. Kneller Andrey Kovalevsky Sameer Kumar 0001 Christopher Lamb 0001 Jeffrey M. LarkinJeff Larkin Verónica G. Vergara Larrea Travis J. Lawrence Scott LeGrand Liran Liss Shih-Hsien Liu M. Graham Lopez William Malpica Don E. MaxwellDon Maxwell Julie C. Mitchell Thomas J. Naughton Sarp Oral John R. Ossyra Gilchan Park Jerry M. Parks Anna Pavlova Loukas Petridis Laura Zanetti Polzi Duncan Poole Stephen W. Poole Wendy Poole Swaroop Pophale Sreeram Potluri Line C. PouchardLine Pouchard Arvind Ramanathan David M. Rogers 0001 Davide Rossetti Diogo Santos-Martins Aaron Scheinberg Ada Sedova Yiftah Shahar Gilad Shainer Pavel Shamis Yue Shen James Simmons Jeremy C. Smith Micholas Dean Smith Carlos Soto 0003 Craig B. Stunkel Mathialakan Thavappiragasam Andreas F. Tillack Aristides Tsaris Jean-Charles Vasnier Manjunath Gorentla Venkata Josh Vincent Vermaas Van Quan Vuong Aaron Welch Junqi Yin Shinjae Yoo Jeffrey Young 0001 Mai Zahran