A Multimodal Sequence-to-Sequence Model for Automatic Assignment of ATC Codes in Drug Discovery and Repurposing.

Axel J. Soto https://dl.acm.org/profile/81438594789 https://orcid.org/0000-0002-9021-7566 https://www.wikidata.org/entity/Q43370873

Trinidad Crozes Eugenia Ulzurrun Juan A. Páez Nuria E. Campillo Axel J. Soto Ignacio Ponzoni A Multimodal Sequence-to-Sequence Model for Automatic Assignment of ATC Codes in Drug Discovery and Repurposing. 2026 4472-4483 66 J. Chem. Inf. Model. 8 https://doi.org/10.1021/acs.jcim.6c00118 db/journals/jcisd/jcisd66.html#CrozesUPCSP26 streams/journals/jcisd

Mauro Fonseca Fernando Delbianco Ana Gabriela Maguitman Axel J. Soto Assessing causality among topics and sentiments: The case of the G20 discussion on Twitter. 1017-1032 2025 51 J. Inf. Sci. 5 https://doi.org/10.1177/01655515231160034 db/journals/jis/jis51.html#FonsecaDMS25 streams/journals/jis

Juan Antonio Ramirez-Orta Ana Gabriela Maguitman Axel J. Soto Evangelos E. Milios ROUGE-SciQFS: A ROUGE-based Method to Automatically Create Datasets for Scientific Query-Focused Summarization. 2187-2197 2025 COLING https://aclanthology.org/2025.coling-main.149/ conf/coling/2025 db/conf/coling/coling2025.html#Ramirez-OrtaMSM25 María Jimena Martínez Silvia N. Schiaffino Daniela Godoy Ignacio Ponzoni Axel J. Soto Can Pharmacovigilance Be Performed on Social Media? Mining Adverse Vaccine Reactions From Twitter. 1-4 2024 CLEI https://doi.org/10.1109/CLEI64178.2024.10700271 conf/clei/2024 db/conf/clei/clei2024.html#MartinezSGPS24 Axel J. Soto Eva Zangerle Joint Proceedings of the ACM IUI 2024 Workshops co-located with the 29th Annual ACM Conference on Intelligent User Interfaces (IUI 2024), Greenville, South Carolina, USA, March 18, 2024. IUI Workshops CEUR-WS.org 2024 CEUR Workshop Proceedings 3660 https://ceur-ws.org/Vol-3660 https://nbn-resolving.org/urn:nbn:de:0074-3660-6 db/conf/iui/iui2024w.html Juan Antonio Ramirez-Orta Eduardo Xamena Ana Gabriela Maguitman Axel J. Soto Flavia P. Zanoto Evangelos E. Milios QuOTeS: Query-Oriented Technical Summarization. 98-114 2023 ICDAR (3) https://doi.org/10.1007/978-3-031-41682-8_7 conf/icdar/2023-3 db/conf/icdar/icdar2023-3.html#RamirezOrtaXMSZM23

Juan Antonio Ramirez-Orta Eduardo Xamena Ana Gabriela Maguitman Axel J. Soto Flavia P. Zanoto Evangelos E. Milios QuOTeS: Query-Oriented Technical Summarization. 2023 abs/2306.11832 CoRR https://doi.org/10.48550/arXiv.2306.11832 db/journals/corr/corr2306.html#abs-2306-11832

María Virginia Sabando Ignacio Ponzoni Evangelos E. Milios Axel J. Soto Using molecular embeddings in QSAR modeling: does it make a difference? 2022 23 Briefings Bioinform. 1 https://doi.org/10.1093/bib/bbab365 db/journals/bib/bib23.html#SabandoPMS22

María Jimena Martínez María Virginia Sabando Axel J. Soto Carlos Roca Carlos Requena-Triguero Nuria E. Campillo Juan A. Páez Ignacio Ponzoni Multitask Deep Neural Networks for Ames Mutagenicity Prediction. 6342-6351 2022 62 J. Chem. Inf. Model. 24 https://doi.org/10.1021/acs.jcim.2c00532 db/journals/jcisd/jcisd62.html#MartinezSSRRCPP22

Juan Antonio Ramirez-Orta Eduardo Xamena Ana Gabriela Maguitman Evangelos E. Milios Axel J. Soto Post-OCR Document Correction with Large Ensembles of Character Sequence-to-Sequence Models. 11192-11199 2022 AAAI https://doi.org/10.1609/aaai.v36i10.21369 conf/aaai/2022 db/conf/aaai/aaai2022.html#Ramirez-OrtaXMM22 Shohreh Haddadan Elena Cabrio Axel J. Soto Serena Villata Topic Modelling and Frame Identification for Political Arguments. 268-281 2022 AI*IA https://doi.org/10.1007/978-3-031-27181-6_19 conf/aiia/2022 db/conf/aiia/aiia2022.html#HaddadanCSV22

Piotr Przybyla Axel J. Soto When classification accuracy is not enough: Explaining news credibility assessment. 102653 2021 58 Inf. Process. Manag. 5 https://doi.org/10.1016/j.ipm.2021.102653 db/journals/ipm/ipm58.html#PrzybylaS21

Weibo Wang Aminul Islam 0001 Abidalrahman Moh'd Axel J. Soto Evangelos E. Milios Nonuniform language in technical writing: Detection and correction. 293-314 2021 27 Nat. Lang. Eng. 3 https://doi.org/10.1017/S1351324920000133 db/journals/nle/nle27.html#WangIMSM21

María Virginia Sabando Pavol Ulbrich Matias Nicolás Selzer Jan Byska Jan Mican Ignacio Ponzoni Axel J. Soto Maria Luján Ganuza Barbora Kozlíková ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. 891-901 2021 27 IEEE Trans. Vis. Comput. Graph. 2 https://doi.org/10.1109/TVCG.2020.3030438 https://www.wikidata.org/entity/Q100529422 db/journals/tvcg/tvcg27.html#SabandoUSBMPSGK21

Dorota Glowacka Evangelos E. Milios Axel J. Soto Osnat Mokryn Fernando V. Paulovich Denis Parra Fourth Workshop on Exploratory Search and Interactive Data Analytics (ESIDA). 18-20 2021 IUI Companion https://doi.org/10.1145/3397482.3450711 conf/iui/2021c db/conf/iui/iui2021c.html#GlowackaMSMPP21

María Virginia Sabando Ignacio Ponzoni Evangelos E. Milios Axel J. Soto Using Molecular Embeddings in QSAR Modeling: Does it Make a Difference? 2021 abs/2104.02604 CoRR https://arxiv.org/abs/2104.02604 db/journals/corr/corr2104.html#abs-2104-02604

Juan Antonio Ramirez-Orta Eduardo Xamena Ana Gabriela Maguitman Evangelos E. Milios Axel J. Soto Post-OCR Document Correction with large Ensembles of Character Sequence Models. 2021 abs/2109.06264 CoRR https://arxiv.org/abs/2109.06264 db/journals/corr/corr2109.html#abs-2109-06264

Johan Nuñez Axel J. Soto Edmar Campos Daryl Campusano Edward Ramirez Álvaro Figueroa Johrdan Huamanchumo Briggitte Suyo Leonardo Milián-Ccopa Preliminary design of an Intention-based sEMG-controlled 3 DOF upper limb exoskeleton for assisted therapy in activities of daily life in patients with hemiparesis. 292-297 2020 BioRob https://doi.org/10.1109/BioRob49111.2020.9224397 conf/biorob/2020 db/conf/biorob/biorob2020.html#JohanAEDEAJBL20

María Virginia Sabando Pavol Ulbrich Matias Nicolás Selzer Jan Byska Jan Mican Ignacio Ponzoni Axel J. Soto Maria Luján Ganuza Barbora Kozlíková ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. 2020 abs/2008.13150 CoRR https://arxiv.org/abs/2008.13150 db/journals/corr/corr2008.html#abs-2008-13150

María Virginia Sabando Ignacio Ponzoni Axel J. Soto Neural-based approaches to overcome feature selection and applicability domain in drug-related property prediction. 2019 85 Appl. Soft Comput. https://doi.org/10.1016/j.asoc.2019.105777 db/journals/asc/asc85.html#SabandoPS19

Axel J. Soto Piotr Przybyla Sophia Ananiadou Thalia: semantic search engine for biomedical abstracts. 1799-1801 2019 35 Bioinform. 10 https://doi.org/10.1093/bioinformatics/bty871 https://www.wikidata.org/entity/Q57452795 db/journals/bioinformatics/bioinformatics35.html#SotoPA19

Dorota Glowacka Evangelos E. Milios Axel J. Soto Fernando Vieira Paulovich Denis Parra Osnat Mokryn Third workshop on exploratory search and interactive data analytics (ESIDA). 141-142 2019 IUI Companion https://doi.org/10.1145/3308557.3313111 conf/iui/2019c db/conf/iui/iui2019c.html#GlowackaMSPPM19

Axel J. Soto Chrysoula Zerva Riza Batista-Navarro Sophia Ananiadou LitPathExplorer: a confidence-based visual text analytics tool for exploring literature-enriched pathway models. 1389-1397 2018 34 Bioinform. 8 https://doi.org/10.1093/bioinformatics/btx774 https://www.wikidata.org/entity/Q47302150 db/journals/bioinformatics/bioinformatics34.html#SotoZBA18

Raheleh Makki Eder J. de Carvalho Axel J. Soto Stephen Brooks Maria Cristina Ferreira de Oliveira Evangelos E. Milios Rosane Minghim ATR-Vis: Visual and Interactive Information Retrieval for Parliamentary Discussions in Twitter. 3:1-3:33 2018 12 ACM Trans. Knowl. Discov. Data 1 https://doi.org/10.1145/3047010 db/journals/tkdd/tkdd12.html#MakkiCSBOMM18

Axel J. Soto Cynthia Ryan Fernando Peña Silva Tapajyoti Das Jacek Wolkowicz Evangelos E. Milios Stephen Brooks Data Quality Challenges in Twitter Content Analysis for Informing Policy Making in Health Care. 2018 HICSS https://hdl.handle.net/10125/49983 http://aisel.aisnet.org/hicss-51/da/big_data_and_analytics/3 conf/hicss/2018 db/conf/hicss/hicss2018.html#SotoRSDWMB18 1-10 Dorota Glowacka Evangelos E. Milios Axel J. Soto Fernando Vieira Paulovich Exploratory Search and Interactive Data Analytics. 9-11 2017 IUI Companion https://doi.org/10.1145/3030024.3040246 conf/iui/2017c db/conf/iui/iui2017c.html#GlowackaMSP17 Piotr Przybyla Axel J. Soto Sophia Ananiadou Identifying Personalised Treatments and Clinical Trials for Precision Medicine using Semantic Search with Thalia. 2017 TREC https://trec.nist.gov/pubs/trec26/papers/NaCTeM-PM.pdf conf/trec/2017 db/conf/trec/trec2017.html#PrzybylaSA17 Dorota Glowacka Evangelos E. Milios Axel J. Soto Fernando Vieira Paulovich Proceedings of the 2017 ACM Workshop on Exploratory Search and Interactive Data Analytics, ESIDA@IUI 2017, Limassol, Cyprus, March 13, 2017 ESIDA@IUI ACM 2017 978-1-4503-4903-1 https://doi.org/10.1145/3038462 db/conf/iui/esida2017.html Raheleh Makki Axel J. Soto Stephen Brooks Evangelos E. Milios Twitter message recommendation based on user interest profiles. 406-410 2016 ASONAM https://doi.org/10.1109/ASONAM.2016.7752266 https://doi.ieeecomputersociety.org/10.1109/ASONAM.2016.7752266 conf/asunam/2016 db/conf/asunam/asonam2016.html#MakkiSBM16 Weibo Wang Abidalrahman Moh'd Aminul Islam 0001 Axel J. Soto Evangelos E. Milios Non-uniform Language Detection in Technical Writing. 1892-1900 2016 EMNLP https://doi.org/10.18653/v1/d16-1194 https://aclanthology.org/D16-1194/ conf/emnlp/2016 db/conf/emnlp/emnlp2016.html#WangMISM16

Axel J. Soto Ryan Kiros Vlado Keselj Evangelos E. Milios Machine learning meets visualization for extracting insights from text data. 15-17 2015 2 AI Matters 2 https://doi.org/10.1145/2847557.2847560 db/journals/aimatters/aimatters2.html#SotoKKM15

María Jimena Martínez Ignacio Ponzoni Mónica Fátima Díaz Gustavo E. Vazquez Axel J. Soto Visual analytics in cheminformatics: user-supervised descriptor selection for QSAR methods. 39:1-39:17 2015 7 J. Cheminformatics https://doi.org/10.1186/s13321-015-0092-4 https://www.wikidata.org/entity/Q27902306 db/journals/jcheminf/jcheminf7.html#MartinezPDVS15

Axel J. Soto Ryan Kiros Vlado Keselj Evangelos E. Milios Exploratory Visual Analysis and Interactive Pattern Extraction from Semi-Structured Data. 16:1-16:36 2015 5 ACM Trans. Interact. Intell. Syst. 3 https://doi.org/10.1145/2812115 https://www.wikidata.org/entity/Q114614120 db/journals/tiis/tiis5.html#SotoKKM15

Axel J. Soto Abidalrahman Mohammad Andrew Albert Aminul Islam 0001 Evangelos E. Milios Michael Doyle Rosane Minghim Maria Cristina Ferreira de Oliveira Similarity-Based Support for Text Reuse in Technical Writing. 97-106 2015 DocEng https://doi.org/10.1145/2682571.2797068 https://www.wikidata.org/entity/Q130882377 conf/doceng/2015 db/conf/doceng/doceng2015.html#SotoMAIMDMO15 Raheleh Makki Axel J. Soto Stephen Brooks Evangelos E. Milios Active Information Retrieval for Linking Twitter Posts with Political Debates. 238-245 2015 ICMLA https://doi.org/10.1109/ICMLA.2015.142 conf/icmla/2015 db/conf/icmla/icmla2015.html#MakkiSBM15

Love Kalra Xinghui Zhao Axel J. Soto Evangelos E. Milios Detection of daily living activities using a two-stage Markov model. 273-285 2013 5 J. Ambient Intell. Smart Environ. 3 https://doi.org/10.3233/AIS-130208 db/journals/jaise/jaise5.html#KalraZSM13

Ajitesh Srivastava Axel J. Soto Evangelos E. Milios A graph-based topic extraction method enabling simple interactive customization. 71-80 2013 ACM Symposium on Document Engineering https://doi.org/10.1145/2494266.2494280 conf/doceng/2013 db/conf/doceng/doceng2013.html#SrivastavaSM13 Ajitesh Srivastava Axel J. Soto Evangelos E. Milios Text clustering using one-mode projection of document-word bipartite graphs. 927-932 2013 SAC https://doi.org/10.1145/2480362.2480539 conf/sac/2013 db/conf/sac/sac2013.html#SrivastavaSM13 Love Kalra Xinghui Zhao Axel J. Soto Evangelos E. Milios A Two-Stage Corrective Markov Model for Activities of Daily Living Detection. 171-179 2012 ISAmI https://doi.org/10.1007/978-3-642-28783-1_21 conf/isami/2012 db/conf/isami/isami2012.html#KalraZSM12 Ryan Kiros Axel J. Soto Evangelos E. Milios Vlado Keselj Representation Learning for Sparse, High Dimensional Multi-label Classification. 463-470 2012 RSCTC https://doi.org/10.1007/978-3-642-32115-3_55 conf/rsctc/2012 db/conf/rsctc/rsctc2012.html#KirosSMK12

Axel J. Soto On the use of machine learning methods for modern drug discovery. 99-100 2011 24 AI Commun. 1 https://doi.org/10.3233/AIC-2010-0487 db/journals/aicom/aicom24.html#Soto11

Axel J. Soto Marc Strickert Gustavo E. Vazquez Evangelos E. Milios Subspace Mapping of Noisy Text Documents. 377-383 2011 Canadian AI https://doi.org/10.1007/978-3-642-21043-3_45 conf/ai/2011 db/conf/ai/ai2011.html#SotoSVM11

Axel J. Soto Marc Strickert Gustavo E. Vazquez Adaptive matrix metrics for molecular descriptor assessment in QSPR classification. 47 2010 2 J. Cheminformatics S-1 https://doi.org/10.1186/1758-2946-2-S1-P47 https://www.wikidata.org/entity/Q45799251 db/journals/jcheminf/jcheminf2S.html#SotoSV10

Marc Strickert Axel J. Soto Gustavo E. Vazquez Adaptive matrix distances aiming at optimum regression subspaces. 2010 ESANN https://www.esann.org/sites/default/files/proceedings/legacy/es2010-78.pdf conf/esann/2010 db/conf/esann/esann2010.html#StrickertSV10 Axel J. Soto Ignacio Ponzoni Gustavo E. Vazquez Segregating Confident Predictions of Chemicals' Properties for Virtual Screening of Drugs. 1005-1012 2009 IWANN (2) https://doi.org/10.1007/978-3-642-02481-8_153 conf/iwann/2009-2 db/conf/iwann/iwann2009-2.html#SotoPV09

Axel J. Soto Rocío L. Cecchini Gustavo E. Vazquez Ignacio Ponzoni An Evolutionary Approach for Feature Selection applied to ADMET Prediction. 55-63 2008 12 Inteligencia Artif. 37 http://journal.iberamia.org/index.php/ia/article/view/564/article%20%281%29.pdf db/journals/aepia/aepia12.html#SotoCVP08

Axel J. Soto Rocío L. Cecchini Gustavo E. Vazquez Ignacio Ponzoni A Wrapper-Based Feature Selection Method for ADMET Prediction Using Evolutionary Computing. 188-199 2008 EvoBIO https://doi.org/10.1007/978-3-540-78757-0_17 conf/evoW/2008bio db/conf/evoW/evobio2008.html#SotoCVP08 Andrew Albert Sophia Ananiadou Riza Theresa Batista-NavarroRiza Batista-Navarro Stephen Brooks Jan Byska Elena Cabrio Nuria E. Campillo Edmar Campos Daryl Campusano Eder J. de Carvalho Rocío L. Cecchini Trinidad Crozes Tapajyoti Das Fernando Delbianco Mónica Fátima Díaz Michael Doyle Álvaro Figueroa Mauro Fonseca Maria Luján Ganuza Dorota Glowacka Daniela Godoy Shohreh Haddadan Johrdan Huamanchumo Aminul Islam 0001 Love Kalra Vlado Keselj Jamie KirosRyan Kiros Barbora Kozlíková Ana Gabriela Maguitman Raheleh Makki María Jimena Martínez Jan Mican Leonardo Milián-Ccopa Evangelos E. Milios Rosane Minghim Abidalrahman MohammadAbidalrahman Moh'd Osnat Mokryn Johan Nuñez Maria Cristina Ferreira de Oliveira Juan A. Páez Denis Parra Fernando Vieira PaulovichFernando V. Paulovich Ignacio Ponzoni Piotr Przybyla Edward Ramirez Juan Antonio Ramirez-Orta Carlos Requena-Triguero Carlos Roca Cynthia Ryan María Virginia Sabando Silvia N. Schiaffino Matias Nicolás Selzer Fernando Peña Silva Ajitesh Srivastava Marc Strickert Briggitte Suyo Pavol Ulbrich Eugenia Ulzurrun Gustavo E. Vazquez Serena Villata Weibo Wang Jacek Wolkowicz Eduardo Xamena Eva Zangerle Flavia P. Zanoto Chrysoula Zerva Xinghui Zhao