Abstract
Alzheimer’s Disease (AD) progression is marked by a gradual decline in cognitive function, with significant events often occurring within uncertain intervals. To comprehensively understand AD, it is essential to jointly model longitudinal cognitive assessments and interval-censored survival data. However, current methodologies have certain limitations when applied to joint models. Maximum Likelihood Estimation often neglects parameter and model uncertainty, while Bayesian methods permit uncertainty quantification but rely on traditional Markov Chain Monte Carlo algorithms, which suffer from slow convergence and high memory demands. To address these challenges, we propose variational Bayesian methods as a more computationally efficient and scalable alternative. Specifically, we focus on two approaches: the Non-Conjugate Variational Message Passing method and the Non-Conjugate Variational Laplace Approximation method. These techniques effectively approximate complex posterior distributions while minimizing the excessive computational demands typically associated with traditional Bayesian techniques. Additionally, we introduce a variational Bayesian framework for local influence analysis and outlier detection, utilizing sparse priors to enhance the model’s robustness against data anomalies. Through simulation studies and an application to the Alzheimer’s Disease Neuroimaging Initiative dataset, we demonstrate the effectiveness of our variational Bayesian joint modeling approach. Our results underscore the advantages of these methods in terms of computational efficiency and scalability, making them well-suited for analyzing complex longitudinal and interval-censored data in AD research.




Similar content being viewed by others
References
Attias, H.: A variational bayesian framework for graphical models. In: Proceedings of the 12th International Conference on Neural Information Processing Systems. NIPS’99, pp. 209–215. MIT Press, Cambridge, MA, USA (1999)
Drugowitsch, J.: Variational Bayesian linear and logistic regression. J. Open Source Softw. 4(38), 1359 (2019)
Diggle, P.J., Sousa, I., Chetwynd, A.G.: Joint modelling of repeated measurements and time-to-event outcomes: the fourth Armitage lecture. Stat. Med. 27(16), 2981–2998 (2008)
Faucett, C.L., Thomas, D.C.: Simultaneously modelling censored survival data and repeatedly measured covariates: a Gibbs sampling approach. Stat. Med. 15(15), 1663–1685 (1996)
Hashemi, R., Gadda, J.H., Commenges, D.: A latent process model for joint modeling of events and marker. Lifetime Data Anal. 9(4), 331–343 (2003)
Knowles, D.A., Minka, T.: Non-conjugate variational message passing for multinomial and binary regression. Adv. Neural Inf. Process. Syst. 24, 1701–1709 (2011)
Kang, K., Pan, D., Song, X.Y.: A joint model for multivariate longitudinal and survival data to discover the conversion to Alzheimer’s disease. Stat. Med. 41(2), 356–373 (2022)
Lawrence, G.A., Boye, M.E., Crowther, M.J., Ibrahim, J.G., Quartey, G., Micallef, S., Bois, F.Y.: Joint modeling of survival and longitudinal non-survival data: current methods and numbers. Stat. Med. 34(14), 2181–2195 (2015)
Li, K., Chan, W., Doody, R.S., Quinn, J., Luo, S.: Prediction of conversion to alzheimer’s disease with longitudinal measures and time-to-event data. J. Alzheimer’s Dis. 58(2), 361–371 (2017)
Li, K., Luo, S.: Functional joint model for longitudinal and time-to-event data: an application to alzheimer’s disease. Stat. Med. 36(22), 3560–3572 (2017)
Liu, W., Li, H., Tang, A., Cui, Z.: Bayesian joint modeling analysis of longitudinal proportional and survival data. Mathematics 11(16), 3469 (2023)
Liu, W.T., Li, H.Q., Tang, N.S., Lyu, J.: Variational Bayesian approach for analyzing interval-censored data under the proportional hazards model. Comput. Stat. Data Anal. 195, 107957 (2024)
Lim, D.Y., Park, B., Nott, D., Wang, X.O., Choi, T.: Sparse signal shrinkage and outlier detection in high-dimensional quantile regression with variational Bayes. Stat. Interface 13(2), 237–249 (2020)
Li, C., Xiao, L., Luo, S.: Joint model for survival and multivariate sparse functional data with application to a study of alzheimer’s disease. Biometrics 78(4), 435–447 (2020)
Manly, J.J., Tang, M.X., Schupf, N., Stern, Y., Vonsattel, J.P.G., Mayeux, R.: Frequency and course of mild cognitive impairment in a multiethnic community. Annals Neurol. 63(4), 494–506 (2008)
Petersen, R.C., Smith, G.E., Waring, S.C., Ivnik, R.J., Tangalos, E.G., Kokmen, E.: Mild cognitive impairment: clinical characterization and outcome. Arch. Neurol. 56(3), 303–308 (1999)
Rustand, D., Van, N.J., Krainski, E.T., Rue, H., Lima, P.C.: Fast and flexible inference for joint models of multivariate longitudinal and survival data using integrated nested Laplace approximations. Biostatistics 25(2), 429–448 (2024)
Schluchter, M.D.: Methods for the analysis of informatively censored longitudinal data. Stat. Med. 11(14–15), 1861–1870 (1992)
Tsiatis, A.A., Davidian, M.: Joint modeling of longitudinal and time-to-event data: an overview. Stat. Sin. 14(3), 809–834 (2004)
Tsiatis, A.A., Degruttola, V., Wulfsohn, M.S.: Modeling the relationship of survival to longitudinal data measured with error: Applications to survival and cd4 counts in patients with aids. J. Am. Stat. Assoc. 90(429), 27–37 (1995)
Tu, Q.J., Sun, J.H.: Gaussian variational approximate inference for joint models of longitudinal biomarkers and a survival outcome. Stat. Med. 42(3), 316–330 (2023)
Van, O.F.M., Swinkels, S.H.N., Hartmann, T., Rizopoulos, D.: Modeling the underlying biological processes in alzheimer’s disease using a multivariate competing risk joint model. Stat. Med. 41(17), 3421–3433 (2022)
Wand, M.P.: Fully simplified multivariate normal updates in non-conjugate variational message passing. J. Mach. Learn. Res. 15(2), 1351–1369 (2014)
Wang, C., Blei, D.M.: Variational inference in nonconjugate models. J. Mach. Learn. Res. 14(1), 1005–1031 (2013)
Wainwright, M.J., Jordan, M.I.: Graphical models, exponential families, and variational inference. Found. Trends .Mach. Learn. 1(1–2), 1–305 (2008)
Wang, L., McMahan, C.S., Hudgens, M.G., Qureshi, Z.P.: A flexible, computationally efficient method for fitting the proportional hazards model to interval-censored data. Biometrics 72(1), 222–231 (2016)
Wipf, D.P., Rao, B.D., Nagarajan, S.: Latent variable Bayesian models for promoting sparsity. IEEE Trans. Inform. Theory 57(9), 6236–6255 (2011)
Wulfsohn, M.S., Tsiatis, A.A.: A joint model for survival and longitudinal data measured with error. Biometrics 53(1), 330–339 (1997)
Wu, Y., Tang, N.: Variational Bayesian partially linear mean shift models for high-dimensional alzheimer’s disease neuroimaging data. Stat. Med. 40(15), 3604–3624 (2021)
Yue, X.B., Kontar, R.: Variational inference of joint models using multivariate gaussian convolution processes. arXiv preprint arXiv:1903.03867 (2019)
Yu, M., Law, N.J., Taylor, J.M.G., Sandler, H.M.: Joint longitudinal-survival-cure models and their application to prostate cancer. Stat. Sin. 14(3), 835–862 (2004)
Yi, F.T., Tang, N.S., Sun, J.G.: Simultaneous variable selection and estimation for joint models of longitudinal and failure time data with interval censoring. Biometrics 78(1), 151–164 (2020)
Zhu, H.T., Ibrahim, J.G., Chi, Y.Y., Tang, N.S.: Bayesian influence measures for joint models for longitudinal and survival data. Biometrics 68(3), 954–964 (2012)
Acknowledgements
The research was partially supported by a grant from the National Key R&D Program of China (Grant Number 2022YFA1003701, Niansheng Tang), a grant from the Natural Science Foundation of China [Grant Number 12261102, Huiqiong Li], the grants from Yunnan Fundamental Research Project, China [Grant Numbers 202201BF070001-004, 202301AS070044,202401AS070152, Huiqiong Li] and a grant from Professional Degree Graduate Research and Innovation Fund Project of the Yunnan University [ZC-23234071, Lu Luo]. The work of Dr. Min Wang was partially supported by the Internal Research Awards (INTRA) program from the UTSA Vice President for Research, Economic Development, and Knowledge Enterprise at the University of Texas at San Antonio.
Author information
Authors and Affiliations
Corresponding authors
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Supplementary Information (download PDF )
Supplementary Material to {\lsquo}Variational Bayesian Analysis for Joint Models of Longitudinal and Failure Time Data with Interval Censoring{rsquo} is included to present additional technical details of Variational Bayesian methods, as well as additional tables and figures regarding the simulation studies and real-data application presented in the main paper. (pdf 18,942KB)
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Li, H., Luo, L., Liu, W. et al. Variational Bayesian analysis for joint models of longitudinal and failure time data with interval censoring. Stat Comput 35, 60 (2025). https://doi.org/10.1007/s11222-025-10592-z
Received:
Accepted:
Published:
Version of record:
DOI: https://doi.org/10.1007/s11222-025-10592-z
