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Variational Bayesian analysis for joint models of longitudinal and failure time data with interval censoring

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Abstract

Alzheimer’s Disease (AD) progression is marked by a gradual decline in cognitive function, with significant events often occurring within uncertain intervals. To comprehensively understand AD, it is essential to jointly model longitudinal cognitive assessments and interval-censored survival data. However, current methodologies have certain limitations when applied to joint models. Maximum Likelihood Estimation often neglects parameter and model uncertainty, while Bayesian methods permit uncertainty quantification but rely on traditional Markov Chain Monte Carlo algorithms, which suffer from slow convergence and high memory demands. To address these challenges, we propose variational Bayesian methods as a more computationally efficient and scalable alternative. Specifically, we focus on two approaches: the Non-Conjugate Variational Message Passing method and the Non-Conjugate Variational Laplace Approximation method. These techniques effectively approximate complex posterior distributions while minimizing the excessive computational demands typically associated with traditional Bayesian techniques. Additionally, we introduce a variational Bayesian framework for local influence analysis and outlier detection, utilizing sparse priors to enhance the model’s robustness against data anomalies. Through simulation studies and an application to the Alzheimer’s Disease Neuroimaging Initiative dataset, we demonstrate the effectiveness of our variational Bayesian joint modeling approach. Our results underscore the advantages of these methods in terms of computational efficiency and scalability, making them well-suited for analyzing complex longitudinal and interval-censored data in AD research.

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References

  • Attias, H.: A variational bayesian framework for graphical models. In: Proceedings of the 12th International Conference on Neural Information Processing Systems. NIPS’99, pp. 209–215. MIT Press, Cambridge, MA, USA (1999)

  • Drugowitsch, J.: Variational Bayesian linear and logistic regression. J. Open Source Softw. 4(38), 1359 (2019)

    Article  Google Scholar 

  • Diggle, P.J., Sousa, I., Chetwynd, A.G.: Joint modelling of repeated measurements and time-to-event outcomes: the fourth Armitage lecture. Stat. Med. 27(16), 2981–2998 (2008)

    Article  MathSciNet  Google Scholar 

  • Faucett, C.L., Thomas, D.C.: Simultaneously modelling censored survival data and repeatedly measured covariates: a Gibbs sampling approach. Stat. Med. 15(15), 1663–1685 (1996)

    Article  Google Scholar 

  • Hashemi, R., Gadda, J.H., Commenges, D.: A latent process model for joint modeling of events and marker. Lifetime Data Anal. 9(4), 331–343 (2003)

    Article  MathSciNet  Google Scholar 

  • Knowles, D.A., Minka, T.: Non-conjugate variational message passing for multinomial and binary regression. Adv. Neural Inf. Process. Syst. 24, 1701–1709 (2011)

    Google Scholar 

  • Kang, K., Pan, D., Song, X.Y.: A joint model for multivariate longitudinal and survival data to discover the conversion to Alzheimer’s disease. Stat. Med. 41(2), 356–373 (2022)

    Article  MathSciNet  Google Scholar 

  • Lawrence, G.A., Boye, M.E., Crowther, M.J., Ibrahim, J.G., Quartey, G., Micallef, S., Bois, F.Y.: Joint modeling of survival and longitudinal non-survival data: current methods and numbers. Stat. Med. 34(14), 2181–2195 (2015)

    Article  MathSciNet  Google Scholar 

  • Li, K., Chan, W., Doody, R.S., Quinn, J., Luo, S.: Prediction of conversion to alzheimer’s disease with longitudinal measures and time-to-event data. J. Alzheimer’s Dis. 58(2), 361–371 (2017)

    Article  Google Scholar 

  • Li, K., Luo, S.: Functional joint model for longitudinal and time-to-event data: an application to alzheimer’s disease. Stat. Med. 36(22), 3560–3572 (2017)

    Article  MathSciNet  Google Scholar 

  • Liu, W., Li, H., Tang, A., Cui, Z.: Bayesian joint modeling analysis of longitudinal proportional and survival data. Mathematics 11(16), 3469 (2023)

    Article  Google Scholar 

  • Liu, W.T., Li, H.Q., Tang, N.S., Lyu, J.: Variational Bayesian approach for analyzing interval-censored data under the proportional hazards model. Comput. Stat. Data Anal. 195, 107957 (2024)

    Article  MathSciNet  Google Scholar 

  • Lim, D.Y., Park, B., Nott, D., Wang, X.O., Choi, T.: Sparse signal shrinkage and outlier detection in high-dimensional quantile regression with variational Bayes. Stat. Interface 13(2), 237–249 (2020)

    Article  MathSciNet  Google Scholar 

  • Li, C., Xiao, L., Luo, S.: Joint model for survival and multivariate sparse functional data with application to a study of alzheimer’s disease. Biometrics 78(4), 435–447 (2020)

    MathSciNet  Google Scholar 

  • Manly, J.J., Tang, M.X., Schupf, N., Stern, Y., Vonsattel, J.P.G., Mayeux, R.: Frequency and course of mild cognitive impairment in a multiethnic community. Annals Neurol. 63(4), 494–506 (2008)

    Article  Google Scholar 

  • Petersen, R.C., Smith, G.E., Waring, S.C., Ivnik, R.J., Tangalos, E.G., Kokmen, E.: Mild cognitive impairment: clinical characterization and outcome. Arch. Neurol. 56(3), 303–308 (1999)

    Article  Google Scholar 

  • Rustand, D., Van, N.J., Krainski, E.T., Rue, H., Lima, P.C.: Fast and flexible inference for joint models of multivariate longitudinal and survival data using integrated nested Laplace approximations. Biostatistics 25(2), 429–448 (2024)

    Article  MathSciNet  Google Scholar 

  • Schluchter, M.D.: Methods for the analysis of informatively censored longitudinal data. Stat. Med. 11(14–15), 1861–1870 (1992)

    Article  Google Scholar 

  • Tsiatis, A.A., Davidian, M.: Joint modeling of longitudinal and time-to-event data: an overview. Stat. Sin. 14(3), 809–834 (2004)

    MathSciNet  Google Scholar 

  • Tsiatis, A.A., Degruttola, V., Wulfsohn, M.S.: Modeling the relationship of survival to longitudinal data measured with error: Applications to survival and cd4 counts in patients with aids. J. Am. Stat. Assoc. 90(429), 27–37 (1995)

    Article  Google Scholar 

  • Tu, Q.J., Sun, J.H.: Gaussian variational approximate inference for joint models of longitudinal biomarkers and a survival outcome. Stat. Med. 42(3), 316–330 (2023)

    Article  MathSciNet  Google Scholar 

  • Van, O.F.M., Swinkels, S.H.N., Hartmann, T., Rizopoulos, D.: Modeling the underlying biological processes in alzheimer’s disease using a multivariate competing risk joint model. Stat. Med. 41(17), 3421–3433 (2022)

    Article  MathSciNet  Google Scholar 

  • Wand, M.P.: Fully simplified multivariate normal updates in non-conjugate variational message passing. J. Mach. Learn. Res. 15(2), 1351–1369 (2014)

    MathSciNet  Google Scholar 

  • Wang, C., Blei, D.M.: Variational inference in nonconjugate models. J. Mach. Learn. Res. 14(1), 1005–1031 (2013)

    MathSciNet  Google Scholar 

  • Wainwright, M.J., Jordan, M.I.: Graphical models, exponential families, and variational inference. Found. Trends .Mach. Learn. 1(1–2), 1–305 (2008)

    Article  Google Scholar 

  • Wang, L., McMahan, C.S., Hudgens, M.G., Qureshi, Z.P.: A flexible, computationally efficient method for fitting the proportional hazards model to interval-censored data. Biometrics 72(1), 222–231 (2016)

    Article  MathSciNet  Google Scholar 

  • Wipf, D.P., Rao, B.D., Nagarajan, S.: Latent variable Bayesian models for promoting sparsity. IEEE Trans. Inform. Theory 57(9), 6236–6255 (2011)

    Article  MathSciNet  Google Scholar 

  • Wulfsohn, M.S., Tsiatis, A.A.: A joint model for survival and longitudinal data measured with error. Biometrics 53(1), 330–339 (1997)

    Article  MathSciNet  Google Scholar 

  • Wu, Y., Tang, N.: Variational Bayesian partially linear mean shift models for high-dimensional alzheimer’s disease neuroimaging data. Stat. Med. 40(15), 3604–3624 (2021)

    Article  MathSciNet  Google Scholar 

  • Yue, X.B., Kontar, R.: Variational inference of joint models using multivariate gaussian convolution processes. arXiv preprint arXiv:1903.03867 (2019)

  • Yu, M., Law, N.J., Taylor, J.M.G., Sandler, H.M.: Joint longitudinal-survival-cure models and their application to prostate cancer. Stat. Sin. 14(3), 835–862 (2004)

    MathSciNet  Google Scholar 

  • Yi, F.T., Tang, N.S., Sun, J.G.: Simultaneous variable selection and estimation for joint models of longitudinal and failure time data with interval censoring. Biometrics 78(1), 151–164 (2020)

    Article  MathSciNet  Google Scholar 

  • Zhu, H.T., Ibrahim, J.G., Chi, Y.Y., Tang, N.S.: Bayesian influence measures for joint models for longitudinal and survival data. Biometrics 68(3), 954–964 (2012)

    Article  MathSciNet  Google Scholar 

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Acknowledgements

The research was partially supported by a grant from the National Key R&D Program of China (Grant Number 2022YFA1003701, Niansheng Tang), a grant from the Natural Science Foundation of China [Grant Number 12261102, Huiqiong Li], the grants from Yunnan Fundamental Research Project, China [Grant Numbers 202201BF070001-004, 202301AS070044,202401AS070152, Huiqiong Li] and a grant from Professional Degree Graduate Research and Innovation Fund Project of the Yunnan University [ZC-23234071, Lu Luo]. The work of Dr. Min Wang was partially supported by the Internal Research Awards (INTRA) program from the UTSA Vice President for Research, Economic Development, and Knowledge Enterprise at the University of Texas at San Antonio.

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Correspondence to Wenting Liu or Min Wang.

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Supplementary Material to {\lsquo}Variational Bayesian Analysis for Joint Models of Longitudinal and Failure Time Data with Interval Censoring{rsquo} is included to present additional technical details of Variational Bayesian methods, as well as additional tables and figures regarding the simulation studies and real-data application presented in the main paper. (pdf 18,942KB)

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Li, H., Luo, L., Liu, W. et al. Variational Bayesian analysis for joint models of longitudinal and failure time data with interval censoring. Stat Comput 35, 60 (2025). https://doi.org/10.1007/s11222-025-10592-z

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