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SLIMBRAIN database: A multimodal image database of in vivo human brains for tumour detection

Martín Pérez, Alberto ORCID: https://orcid.org/0000-0003-4715-6814, Villa Romero, Manuel ORCID: https://orcid.org/0000-0001-7000-6289, Rosa Olmeda, Gonzalo ORCID: https://orcid.org/0000-0002-3236-1236, Sancho Aragón, Jaime ORCID: https://orcid.org/0000-0001-8767-6596, Vázquez Valle, Guillermo ORCID: https://orcid.org/0000-0001-5821-0877, Urbanos García, Gemma ORCID: https://orcid.org/0000-0002-7478-996X, Martínez de Ternero Ruiz, Alejandro ORCID: https://orcid.org/0000-0003-2668-2903, Chavarrías Lapastora, Miguel ORCID: https://orcid.org/0000-0003-0280-3440, Jimenez Roldan, Luis ORCID: https://orcid.org/0000-0002-9864-0385, Pérez Núñez, Ángel ORCID: https://orcid.org/0000-0002-2391-6586, Lagares Gómez-Abascal, Alfonso ORCID: https://orcid.org/0000-0003-3996-0554, Juárez Martínez, Eduardo ORCID: https://orcid.org/0000-0002-6096-1511 and Sanz Alvaro, César ORCID: https://orcid.org/0000-0002-2411-9132 (2025). SLIMBRAIN database: A multimodal image database of in vivo human brains for tumour detection. "Scientific Data", v. 12 (n. 1); p. 836. ISSN 2052-4463. https://doi.org/10.1038/s41597-025-04993-y.

Description

Title: SLIMBRAIN database: A multimodal image database of in vivo human brains for tumour detection
Author/s:
Item Type: Article
Título de Revista/Publicación: Scientific Data
Date: 21 May 2025
ISSN: 2052-4463
Volume: 12
Number: 1
Subjects:
SDG:
Freetext Keywords: slimbrain, database, hyperspectral imaging, multimodal database, human brains, brain tumors, neurosurgery
Faculty: E.T.S.I. y Sistemas de Telecomunicación (UPM)
Department: Ingeniería Audiovisual y Comunicaciones
UPM's Research Group: Diseño Electrónico y Microelectrónico GDEM
Creative Commons Licenses: Recognition - No derivative works - Non commercial

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Abstract

Hyperspectral imaging (HSI) and machine learning (ML) have been employed in the medical field for classifying highly infiltrative brain tumours. Although existing HSI databases of in vivo human brains are available, they present two main deficiencies. First, the amount of labelled data are scarce, and second, 3D-tissue information is unavailable. To address both issues, we present the SLIMBRAIN database, a multimodal image database of in vivo human brains that provides HS brain tissue data within the 400--1000 nm spectra, as well as RGB, depth and multiview images. Two HS cameras, two depth cameras and different RGB sensors were used to capture images and videos from 193 patients. All the data in the SLIMBRAIN database can be used in a variety of ways, for example, to train ML models with more than 1 million HS pixels available and labelled by neurosurgeons, to reconstruct 3D scenes or to visualize RGB brain images with different pathologies, offering unprecedented flexibility for both the medical and engineering communities.

Para acceder a los datos, es necesario solicitar acceso mediante la firma de un "Data Usage Agreement" (DUA). Disponible en el repositorio de e-cienciaDatos: https://doi.org/10.21950/LAUR3D y la web oficial de la base de datos: https://slimbrain.citsem.upm.es/

Funding Projects

Type
Code
Acronym
Leader
Title
Madrid Regional Government
Y2018/BIO-4826
NEMESIS-3D-CM
Eduardo Juárez Martínez
NEMESIS-3D-CM: Clasificación intraoperatoria de tumores cerebrales mediante modelos inmersivos 3D en la Comunidad de Madrid
Government of Spain
PID2020-116417RB-C41
TALENT-HIPSTER
Eduardo Juárez Martínez
TALENT-HIPSTER: High Performance Systems and Technologies for E-health and Fish Farming
Horizon Europe
101137416
STRATUM
Gustavo M. Callico
STRATUM: 3D Decision Support Tool for Brain Tumor Surgery

More information

Item ID: 96999
DC Identifier: https://oa.upm.es/96999/
OAI Identifier: oai:oa.upm.es:96999
Portal Científico URL: https://portalcientifico.upm.es/es/ipublic/item/10368901
DOI: 10.1038/s41597-025-04993-y
Official URL: https://www.nature.com/articles/s41597-025-04993-y
Deposited by: Dr. Alberto Martín Pérez
Deposited on: 08 Jul 2026 06:16
Last Modified: 08 Jul 2026 06:16