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. 2007 Jun;189(11):4161-7.
doi: 10.1128/JB.00106-07. Epub 2007 Mar 30.

Genome sequence and analysis of a Propionibacterium acnes bacteriophage

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Genome sequence and analysis of a Propionibacterium acnes bacteriophage

Mark D Farrar et al. J Bacteriol. 2007 Jun.

Abstract

Cutaneous propionibacteria are important commensals of human skin and are implicated in a wide range of opportunistic infections. Propionibacterium acnes is also associated with inflammatory acne vulgaris. Bacteriophage PA6 is the first phage of P. acnes to be sequenced and demonstrates a high degree of similarity to many mycobacteriophages both morphologically and genetically. PA6 possesses an icosahedreal head and long noncontractile tail characteristic of the Siphoviridae. The overall genome organization of PA6 resembled that of the temperate mycobacteriophages, although the genome was much smaller, 29,739 bp (48 predicted genes), compared to, for example, 50,550 bp (86 predicted genes) for the Bxb1 genome. PA6 infected only P. acnes and produced clear plaques with turbid centers, but it lacked any obvious genes for lysogeny. The host range of PA6 was restricted to P. acnes, but the phage was able to infect and lyse all P. acnes isolates tested. Sequencing of the PA6 genome makes an important contribution to the study of phage evolution and propionibacterial genetics.

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Figures

FIG. 1.
FIG. 1.
Transmission electron micrograph of negatively stained PA6 particles. Bar = 100 nm.
FIG. 2.
FIG. 2.
Genome organization of PA6. The 29,739-bp genome is represented by a horizontal bar with 1-kb intervals marked. Putative ORFs are indicated by boxes at three different heights representing the three frames on each strand. Rightward-transcribed genes are above the genome, and leftward-transcribed genes are below the genome. Predicted functions and homologues are indicated. ORFs with phage and nonphage homologues are indicated by gray and black boxes, respectively. ORFs unique to PA6 are indicated by white boxes.
FIG. 3.
FIG. 3.
Comparison of PA6 gp19 with the human collagen α1(III) chain. Protein sequences are aligned, and identical amino acid residues are marked with asterisks. The glycine residues of the repetitive G-X-Y motifs are in bold type. The numbers indicate the positions of the amino acid sequences in the proteins.
FIG. 4.
FIG. 4.
Repeat motifs located in the noncoding region of the PA6 genome. The noncoding region between ORF45 and ORF46 contains several direct (DR), inverted (IR), and symmetric (SR) repeats that are indicated by arrows. The numbers indicate the positions in the PA6 genome, and the start of ORF46 is in bold type.

References

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