The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery (Q19671659)

14 July 2022

17

Robert Hoehndorf

Robert

Hoehndorf

1 reference

14 July 2022

14

Matthias Samwald

Matthias

Samwald

1 reference

14 July 2022

Núria Queralt Rosinach

13

object named as

Núria Queralt-Rosinach

Núria

Queralt-Rosinach

1 reference

14 July 2022

9

Laura I Furlong

Laura I

Furlong

1 reference

14 July 2022

8

Geraint Duck

Geraint

Duck

1 reference

14 July 2022

Alison Callahan

Alison

Callahan

4

1 reference

14 July 2022

16

Mark D Wilkinson

Mark D

Wilkinson

1 reference

14 July 2022

3

Joachim Baran

Joachim

Baran

1 reference

Natalia Villanueva-Rosales

14 July 2022

15

Natalia

Villanueva-Rosales

Natalia Villanueva-Rosales

1 reference

14 July 2022

5

Leonid

Chepelev

Leonid Chepelev

1 reference

14 July 2022

Christopher Jo Baker

2

Christopher Jo

Baker

1 reference

14 July 2022

José Cruz-Toledo

6

José

Cruz-Toledo

1 reference

14 July 2022

Nicholas R Del Rio

7

Nicholas R

Del Rio

1 reference

14 July 2022

Nichealla Keath

10

Nichealla

Keath

1 reference

14 July 2022

Dana Klassen

11

Dana

Klassen

1 reference

14 July 2022

James P McCusker

12

James P

McCusker

1 reference

http://www.jbiomedsem.com/content/5/1/14

14 July 2022

publication date

6 March 2014

0 references

language of work or name

English

0 references

work available at URL

0 references

published in

Journal of Biomedical Semantics

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volume

5

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issue

1

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page(s)

14

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cites work

Pharmacogenomics knowledge for personalized medicine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Adding a little reality to building ontologies for biology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Relations in biomedical ontologies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Novel protein-protein interactions inferred from literature context

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Ontological realism: A methodology for coordinated evolution of scientific ontologies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Modeling biomedical experimental processes with OBI

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Ontology-Based Querying with Bio2RDF's Linked Open Data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Integrating systems biology models and biomedical ontologies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Bio-ontologies: current trends and future directions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

PhenomeNET: a whole-phenome approach to disease gene discovery

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Scalable representations of diseases in biomedical ontologies

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

SADI, SHARE, and the in silico scientific method

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Alignment of the UMLS semantic network with BioTop: methodology and assessment

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

State of the nation in data integration for bioinformatics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Towards a top-domain ontology for linking biomedical ontologies.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

Ontologies and semantic data integration

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

BioModels Database: a repository of mathematical models of biological processes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4015691

An ontology for describing and synthesizing ecological observation data

30 May 2018

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1186/2041-1480-5-14

Broadening the Scope of Nanopublications

28 October 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1186/2041-1480-5-14

Ontology Design Patterns for Semantic Web Content

28 October 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1186/2041-1480-5-14

Applying Ontology Design Patterns in Bio-ontologies

28 October 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1186/2041-1480-5-14

The Semantic Web Revisited

28 October 2023

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1186/2041-1480-5-14

28 October 2023

Identifiers

DOI

10.1186/2041-1480-5-14

1 reference

journals/biomedsem/DumontierBBCCCRDFKKMQSVWH14

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions publication ID

28 January 2021

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/2041-1480-5-14

1 reference

1 reference

1 reference