Combining heterogeneous data sources for accurate functional annotation of proteins. (Q30604355)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

title

Combining heterogeneous data sources for accurate functional annotation of proteins (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Karin Verspoor

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

5

Asa Ben-Hur

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

author name string

Artem Sokolov

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

Christopher Funk

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

publication date

28 February 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

volume

14 Suppl 3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

page(s)

S10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

26 February 2020

copyright license

start time

1 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

The gene normalization task in BioCreative III

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Analysis of protein function and its prediction from amino acid sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

PILGRM: an interactive data-driven discovery platform for expert biologists

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Hierarchical classification of gene ontology terms using the GOstruct method

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Low-complexity regions within protein sequences have position-dependent roles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

The use of gene ontology evidence codes in preventing classifier assessment bias

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Protein function annotation by homology-based inference

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Towards structured output prediction of enzyme function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

STRING 8--a global view on proteins and their functional interactions in 630 organisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Consistent probabilistic outputs for protein function prediction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Predicting gene function in a hierarchical context with an ensemble of classifiers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Functional grouping based on signatures in protein termini

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Hierarchical multi-label prediction of gene function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Mining protein function from text using term-based support vector machines

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Finding genomic ontology terms in text using evidence content

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Learning statistical models for annotating proteins with function information using biomedical text

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Evaluation of BioCreAtIvE assessment of task 2

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

The gene ontology categorizer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Kernel-based data fusion and its application to protein function prediction in yeast.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Automatic prediction of protein function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

OntoBlast function: From sequence similarities directly to potential functional annotations by ontology terms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Automated Gene Ontology annotation for anonymous sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Predicting functions from protein sequences--where are the bottlenecks?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584846

The use and analysis of microarray data

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Pattern recognition techniques in microarray data analysis: a survey

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Microarray data analysis: from disarray to consolidation and consensus

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Visualization and analysis of microarray and gene ontology data with treemaps

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Genesis: cluster analysis of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Diagnosis of multiple cancer types by shrunken centroids of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Visualization methods for statistical analysis of microarray clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Mapping the protein universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

A global representation of the protein fold space

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Global mapping of the protein structure space and application in structure-based inference of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Maps of protein structure space reveal a fundamental relationship between protein structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

KEGG: kyoto encyclopedia of genes and genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

The CATH Database provides insights into protein structure/function relationships.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Data growth and its impact on the SCOP database: new developments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Short time-series microarray analysis: methods and challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

A cDNA microarray analysis of the response to heat stress in hepatopancreas tissue of the porcelain crab Petrolisthes cinctipes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

The porcelain crab transcriptome and PCAD, the porcelain crab microarray and sequence database

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

STEM: a tool for the analysis of short time series gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Pre-calculated protein structure alignments at the RCSB PDB website

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S10

Practical limits of function prediction

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23514123

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-14-S14-S10

reason for deprecated rank

incorrect identifier value

1 reference

10.1186/1471-2105-14-S3-S10

15 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/SokolovFGVB13

26 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions publication ID

28 January 2021

1020835861

0 references

Fatcat ID

release_wckvtlgrlvde3iglffqfu6edxi

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/wckvtlgrlvde3iglffqfu6edxi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23514123%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

PubMed publication ID

23514123

1 reference