mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers (Q49446450)

20 February 2018

title

mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers (English)

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20 February 2018

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Mulin Jun Li

1

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20 February 2018

Hongcheng Yao

2

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20 February 2018

Dandan Huang

3

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20 February 2018

Huanhuan Liu

4

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20 February 2018

Zipeng Liu

5

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20 February 2018

Hang Xu

6

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20 February 2018

Yiming Qin

7

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20 February 2018

Jeanette Prinz

8

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20 February 2018

Weiyi Xia

9

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20 February 2018

Panwen Wang

10

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20 February 2018

Bin Yan

11

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20 February 2018

Nhan L Tran

12

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20 February 2018

Jean-Pierre Kocher

13

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20 February 2018

Pak C Sham

14

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20 February 2018

Junwen Wang

15

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20 February 2018

publication date

8 May 2017

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20 February 2018

language of work or name

English

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published in

Nucleic Acids Research

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20 February 2018

volume

45

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20 February 2018

issue

W1

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20 February 2018

page(s)

W215-W221

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20 February 2018

Creative Commons Attribution-NonCommercial 4.0 International

copyright license

start time

8 May 2017

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

COSMIC: somatic cancer genetics at high-resolution

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Mechanisms of resistance to EGFR-targeted drugs: lung cancer

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Trial Reporting in ClinicalTrials.gov - The Final Rule

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Analysis of protein-coding genetic variation in 60,706 humans

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Lollipops in the Clinic: Information Dense Mutation Plots for Precision Medicine

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

A landscape of pharmacogenomic interactions in cancer.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Predicting regulatory variants with composite statistic.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Overcoming EGFR(T790M) and EGFR(C797S) resistance with mutant-selective allosteric inhibitors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Defining actionable mutations for oncology therapeutic development.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Understanding the Genetic Mechanisms of Cancer Drug Resistance Using Genomic Approaches

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

dbNSFP v3.0: A One-Stop Database of Functional Predictions and Annotations for Human Nonsynonymous and Splice-Site SNVs

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

DGIdb 2.0: mining clinically relevant drug-gene interactions.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

TransVar: a multilevel variant annotator for precision genomics

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

The influence of subclonal resistance mutations on targeted cancer therapy

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Harnessing Connectivity in a Large-Scale Small-Molecule Sensitivity Dataset

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

A global reference for human genetic variation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Cancer Driver Log (CanDL): Catalog of Potentially Actionable Cancer Mutations

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

The right drugs at the right time for the right patient: the MD Anderson precision oncology decision support platform

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Database of genomic biomarkers for cancer drugs and clinical targetability in solid tumors

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

In silico prediction of splice-altering single nucleotide variants in the human genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Current trend of annotating single nucleotide variation in humans--A case study on SNVrap

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

A general framework for estimating the relative pathogenicity of human genetic variants

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

The Cancer Genome Atlas Pan-Cancer analysis project

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

An interactive resource to identify cancer genetic and lineage dependencies targeted by small molecules.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Do altmetrics work? Twitter and ten other social web services

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

DNA-Mutation Inventory to Refine and Enhance Cancer Treatment (DIRECT): A Catalog of Clinically Relevant Cancer Mutations to Enable Genome-Directed Anticancer Therapy

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Genetic variant representation, annotation and prioritization in the post-GWAS era.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Systematic identification of genomic markers of drug sensitivity in cancer cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

The variant call format and VCFtools

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Tabix: fast retrieval of sequence features from generic TAB-delimited files

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

The T790M mutation in EGFR kinase causes drug resistance by increasing the affinity for ATP

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

DrugBank: a comprehensive resource for in silico drug discovery and exploration

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5793836

NCI-MATCH Launch Highlights New Trial Design in Precision-Medicine Era:

22 May 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28482068

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKX400

1 reference

20 February 2018

journals/nar/LiYHLLXQPXWYTKS17

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

20 February 2018

PubMed publication ID

28482068

1 reference

20 February 2018