Natural Language Processing for EHR-Based Computational Phenotyping (Q89559893)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

title

Natural Language Processing for EHR-Based Computational Phenotyping (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

natural language processing

6 April 2020

main subject

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

author name string

Zexian Zeng

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

Yu Deng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

Xiaoyu Li

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

Tristan Naumann

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

publication date

25 June 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

IEEE/ACM Transactions on Computational Biology and Bioinformatics

6 April 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

page(s)

139-153

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

Logical observation identifier names and codes (LOINC) database: a public use set of codes and names for electronic reporting of clinical laboratory test results.

6 April 2020

cites work

1 reference

12 December 2020

Identification of suspected tuberculosis patients based on natural language processing of chest radiograph reports

1 reference

12 December 2020

Automated Tuberculosis Detection

1 reference

12 December 2020

Identification of findings suspicious for breast cancer based on natural language processing of mammogram reports

1 reference

12 December 2020

Narrative based medicine: narrative based medicine in an evidence based world

1 reference

12 December 2020

Ad hoc classification of radiology reports

1 reference

12 December 2020

Classification algorithms applied to narrative reports

1 reference

12 December 2020

Automatic detection of acute bacterial pneumonia from chest X-ray reports

1 reference

12 December 2020

Enrolling patients into clinical trials faster using RealTime Recuiting

1 reference

12 December 2020

Assessing thesaurus-based query expansion using the UMLS Metathesaurus

1 reference

12 December 2020

PubMed: bridging the information gap.

1 reference

12 December 2020

A comparison of classification algorithms to automatically identify chest X-ray reports that support pneumonia

1 reference

12 December 2020

Comparing supervised and unsupervised category learning

1 reference

12 December 2020

"Understanding" medical school curriculum content using KnowledgeMap

1 reference

12 December 2020

The Unified Medical Language System (UMLS): integrating biomedical terminology

1 reference

12 December 2020

HPID: the Human Protein Interaction Database

1 reference

12 December 2020

Textpresso: an ontology-based information retrieval and extraction system for biological literature

1 reference

12 December 2020

A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge

1 reference

12 December 2020

Accuracy of Veterans Administration databases for a diagnosis of rheumatoid arthritis

1 reference

12 December 2020

CoPub Mapper: mining MEDLINE based on search term co-publication

1 reference

12 December 2020

A survey of current work in biomedical text mining

1 reference

12 December 2020

Accuracy of ICD-9-CM codes for identifying cardiovascular and stroke risk factors.

1 reference

12 December 2020

Measuring diagnoses: ICD code accuracy

1 reference

12 December 2020

Implementing the iHOP concept for navigation of biomedical literature

1 reference

12 December 2020

A fast learning algorithm for deep belief nets

1 reference

12 December 2020

Development of an electronic health record-based Clinical Trial Alert system to enhance recruitment at the point of care

1 reference

12 December 2020

Comparing natural language processing tools to extract medical problems from narrative text

1 reference

12 December 2020

Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system

1 reference

12 December 2020

Use of an electronic medical record for the identification of research subjects with diabetes mellitus

1 reference

12 December 2020

Electronic medical records for clinical research: application to the identification of heart failure.

1 reference

12 December 2020

Collection of cancer stage data by classifying free-text medical reports

1 reference

12 December 2020

Extracting semantic predications from Medline citations for pharmacogenomics

1 reference

12 December 2020

MeInfoText: associated gene methylation and cancer information from text mining

1 reference

12 December 2020

Physicians' perceptions of an electronic health record-based clinical trial alert approach to subject recruitment: a survey

1 reference

12 December 2020

Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text

1 reference

12 December 2020

Natural language processing framework to assess clinical conditions

1 reference

12 December 2020

Electronic screening improves efficiency in clinical trial recruitment

1 reference

12 December 2020

MedEx: a medication information extraction system for clinical narratives.

1 reference

12 December 2020

Electronic medical records for discovery research in rheumatoid arthritis

1 reference

12 December 2020

PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations

1 reference

12 December 2020

Symbolic rule-based classification of lung cancer stages from free-text pathology reports

1 reference

12 December 2020

The "meaningful use" regulation for electronic health records

1 reference

12 December 2020

Using text to build semantic networks for pharmacogenomics

1 reference

12 December 2020

Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease

1 reference

12 December 2020

Combining free text and structured electronic medical record entries to detect acute respiratory infections

1 reference

12 December 2020

A high throughput semantic concept frequency based approach for patient identification: a case study using type 2 diabetes mellitus clinical notes

1 reference

12 December 2020

Analysis of False Positive Errors of an Acute Respiratory Infection Text Classifier due to Contextual Features

1 reference

12 December 2020

Patient Safety in the Context of Neonatal Intensive Care: Research and Educational Opportunities

1 reference

12 December 2020

Using electronic health records to drive discovery in disease genomics

1 reference

12 December 2020

Combining PubMed knowledge and EHR data to develop a weighted bayesian network for pancreatic cancer prediction

1 reference

12 December 2020

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text

1 reference

12 December 2020

EliXR: an approach to eligibility criteria extraction and representation

1 reference

12 December 2020

Natural language processing: an introduction

1 reference

12 December 2020

Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts

1 reference

12 December 2020

Discovery and explanation of drug-drug interactions via text mining

1 reference

12 December 2020

Predicting clopidogrel response using DNA samples linked to an electronic health record.

1 reference

12 December 2020

Naïve Electronic Health Record phenotype identification for Rheumatoid arthritis

1 reference

12 December 2020

Extracting and integrating data from entire electronic health records for detecting colorectal cancer cases

1 reference

12 December 2020

Extracting diagnoses and investigation results from unstructured text in electronic health records by semi-supervised machine learning

1 reference

12 December 2020

A system for coreference resolution for the clinical narrative

1 reference

12 December 2020

Importance of multi-modal approaches to effectively identify cataract cases from electronic health records

1 reference

12 December 2020

Portability of an algorithm to identify rheumatoid arthritis in electronic health records.

1 reference

12 December 2020

Naïve Bayesian Classifier and Genetic Risk Score for Genetic Risk Prediction of a Categorical Trait: Not so Different after all!

1 reference

12 December 2020

Pneumonia identification using statistical feature selection

1 reference

12 December 2020

Detection of pharmacovigilance-related adverse events using electronic health records and automated methods

1 reference

12 December 2020

Identifying primary and recurrent cancers using a SAS-based natural language processing algorithm

1 reference

12 December 2020

Next-generation phenotyping of electronic health records

1 reference

12 December 2020

Biomedical text mining and its applications in cancer research

1 reference

12 December 2020

Associations of autoantibodies, autoimmune risk alleles, and clinical diagnoses from the electronic medical records in rheumatoid arthritis cases and non-rheumatoid arthritis controls

1 reference

12 December 2020

Chapter 11: Genome-Wide Association Studies

1 reference

12 December 2020

Risk stratification of ICU patients using topic models inferred from unstructured progress notes

1 reference

12 December 2020

Assessing pneumonia identification from time-ordered narrative reports

1 reference

12 December 2020

EpiDEA: extracting structured epilepsy and seizure information from patient discharge summaries for cohort identification.

1 reference

12 December 2020

Methods for identifying suicide or suicidal ideation in EHRs

1 reference

12 December 2020

Graph-based signal integration for high-throughput phenotyping

1 reference

12 December 2020

A PheWAS approach in studying HLA-DRB1*1501

1 reference

12 December 2020

Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk

1 reference

12 December 2020

Idiopathic acute liver injury in paediatric outpatients: incidence and signal detection in two European countries

1 reference

12 December 2020

Automated classification of limb fractures from free-text radiology reports using a clinician-informed gazetteer methodology

1 reference

12 December 2020

Computational phenotype discovery using unsupervised feature learning over noisy, sparse, and irregular clinical data

1 reference

12 December 2020

Semi-supervised clinical text classification with Laplacian SVMs: An application to cancer case management

1 reference

12 December 2020

Applying active learning to high-throughput phenotyping algorithms for electronic health records data

1 reference

12 December 2020

Unsupervised biomedical named entity recognition: Experiments with clinical and biological texts

1 reference

12 December 2020

Identifying phenotypic signatures of neuropsychiatric disorders from electronic medical records

1 reference

12 December 2020

Electronic health records based phenotyping in next-generation clinical trials: a perspective from the NIH Health Care Systems Collaboratory

1 reference

12 December 2020

Using the Electronic Medical Record to Identify Community-Acquired Pneumonia: Toward a Replicable Automated Strategy

1 reference

12 December 2020

Defining a comprehensive verotype using electronic health records for personalized medicine

1 reference

12 December 2020

Automated determination of metastases in unstructured radiology reports for eligibility screening in oncology clinical trials

1 reference

12 December 2020

Automated extraction of clinical traits of multiple sclerosis in electronic medical records

1 reference

12 December 2020

A review of approaches to identifying patient phenotype cohorts using electronic health records.

1 reference

12 December 2020

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data

1 reference

12 December 2020

Comorbidity Clusters in Autism Spectrum Disorders: An Electronic Health Record Time-Series Analysis

1 reference

12 December 2020

Phenotyping for patient safety: algorithm development for electronic health record based automated adverse event and medical error detection in neonatal intensive care

1 reference

12 December 2020

Automatic lymphoma classification with sentence subgraph mining from pathology reports

1 reference

12 December 2020

Signal detection of potentially drug-induced acute liver injury in children using a multi-country healthcare database network

1 reference

12 December 2020

Linking biochemical pathways and networks to adverse drug reactions.

1 reference

12 December 2020

Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department.

1 reference

12 December 2020

An Unsupervised Text Mining Method for Relation Extraction from Biomedical Literature

1 reference

12 December 2020

Limestone: high-throughput candidate phenotype generation via tensor factorization.

1 reference

12 December 2020

Unfolding Physiological State: Mortality Modelling in Intensive Care Units

1 reference

12 December 2020

Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record

1 reference

12 December 2020

Text Mining in Cancer Gene and Pathway Prioritization

1 reference

12 December 2020

Phenomapping for Novel Classification of Heart Failure With Preserved Ejection Fraction

1 reference

12 December 2020

How essential are unstructured clinical narratives and information fusion to clinical trial recruitment?

1 reference

12 December 2020

A hybrid approach to identify subsequent breast cancer using pathology and automated health information data.

1 reference

12 December 2020

Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text

1 reference

12 December 2020

Development of phenotype algorithms using electronic medical records and incorporating natural language processing

1 reference

12 December 2020

Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources

1 reference

12 December 2020

Extracting research-quality phenotypes from electronic health records to support precision medicine

1 reference

12 December 2020

Semi-Supervised Learning to Identify UMLS Semantic Relations

1 reference

12 December 2020

A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases

1 reference

12 December 2020

Using EHRs and Machine Learning for Heart Failure Survival Analysis

1 reference

12 December 2020

Named Entity Recognition in Chinese Clinical Text Using Deep Neural Network

1 reference

12 December 2020

Identification of Adverse Drug Events from Free Text Electronic Patient Records and Information in a Large Mental Health Case Register

1 reference

12 December 2020

Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts

1 reference

12 December 2020

Phenotyping Adverse Drug Reactions: Statin-Related Myotoxicity

1 reference

12 December 2020

Comparison of machine learning classifiers for influenza detection from emergency department free-text reports

1 reference

12 December 2020

Early detection of heart failure with varying prediction windows by structured and unstructured data in electronic health records

1 reference

12 December 2020

Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations

1 reference

12 December 2020

Unsupervised entity and relation extraction from clinical records in Italian.

1 reference

12 December 2020

Tensor factorization toward precision medicine

1 reference

12 December 2020

In Reply: Towards precision medicine: phenotyping bronchiectasis with unsupervised learning technique

1 reference

12 December 2020

A Multivariate Timeseries Modeling Approach to Severity of Illness Assessment and Forecasting in ICU with Sparse, Heterogeneous Clinical Data

1 reference

12 December 2020

Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records.

1 reference

12 December 2020

Discovering causal interactions using Bayesian network scoring and information gain

1 reference

12 December 2020

Using Machine Learning to Predict Laboratory Test Results

1 reference

12 December 2020

Performance of a Natural Language Processing (NLP) Tool to Extract Pulmonary Function Test (PFT) Reports from Structured and Semistructured Veteran Affairs (VA) Data

1 reference

12 December 2020

Evaluating electronic health record data sources and algorithmic approaches to identify hypertensive individuals.

1 reference

12 December 2020

Semi-supervised learning of the electronic health record for phenotype stratification

1 reference

12 December 2020

Assessing occurrence of hypoglycemia and its severity from electronic health records of patients with type 2 diabetes mellitus

1 reference

12 December 2020

Bidirectional RNN for Medical Event Detection in Electronic Health Records

1 reference

12 December 2020

Structured prediction models for RNN based sequence labeling in clinical text

1 reference

12 December 2020

Tensor Factorization for Precision Medicine in Heart Failure with Preserved Ejection Fraction

1 reference

12 December 2020

Early recognition of multiple sclerosis using natural language processing of the electronic health record

1 reference

12 December 2020

Unsupervised ensemble ranking of terms in electronic health record notes based on their importance to patients

1 reference

12 December 2020

Investigating Longitudinal Tobacco Use Information from Social History and Clinical Notes in the Electronic Health Record

1 reference

12 December 2020

NegAIT: A new parser for medical text simplification using morphological, sentential and double negation

1 reference

12 December 2020

Automated annotation and classification of BI-RADS assessment from radiology reports

1 reference

12 December 2020

Deep learning for healthcare: review, opportunities and challenges.

1 reference

12 December 2020

Predictive modeling for classification of positive valence system symptom severity from initial psychiatric evaluation records.

1 reference

12 December 2020

Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review

1 reference

12 December 2020

Recurrent neural networks for classifying relations in clinical notes.

1 reference

12 December 2020

Applying deep neural networks to unstructured text notes in electronic medical records for phenotyping youth depression

1 reference

12 December 2020

Word2Vec inversion and traditional text classifiers for phenotyping lupus.

1 reference

12 December 2020

Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes.

1 reference

12 December 2020

3D-MICE: integration of cross-sectional and longitudinal imputation for multi-analyte longitudinal clinical data

1 reference

12 December 2020

Contralateral Breast Cancer Event Detection Using Nature Language Processing

1 reference

12 December 2020

Deep EHR: A Survey of Recent Advances in Deep Learning Techniques for Electronic Health Record (EHR) Analysis

1 reference

12 December 2020

10.1109/TCBB.2018.2849968

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

DBLP publication ID

journals/tcbb/ZengDLNL19

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29994486%20AND%20SRC:MED&resulttype=core&format=json

6 April 2020

PubMed publication ID

29994486

1 reference