Statistical outbreak detection by joining medical records and pathogen similarity (Q91642203)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30771483%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

title

Statistical outbreak detection by joining medical records and pathogen similarity (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30771483%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

1 reference

9

Lee H Harrison

1 reference

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23 April 2020

6

Kathleen A Shutt

1 reference

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23 April 2020

Alexander J Sundermann

series ordinal

3

object named as

Alexander Sundermann

1 reference

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23 April 2020

2

Jieshi Chen

1 reference

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23 April 2020

5

Melissa I Saul

1 reference

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23 April 2020

10

Artur Dubrawski

1 reference

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23 April 2020

7

Marissa Pacey

1 reference

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23 April 2020

8

Mustapha M Mustapha

1 reference

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23 April 2020

author name string

James K Miller

series ordinal

1

1 reference

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23 April 2020

Jane W Marsh

series ordinal

4

1 reference

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23 April 2020

publication date

13 February 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30771483%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biomedical Informatics

23 April 2020

language of work or name

English

0 references

published in

1 reference

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23 April 2020

volume

91

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23 April 2020

page(s)

103126

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Automated data mining of the electronic health record for investigation of healthcare-associated outbreaks

23 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

When are pathogen genome sequences informative of transmission events?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Implementation and evaluation of an automated surveillance system to detect hospital outbreak

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Towards an integrated food safety surveillance system: a simulation study to explore the potential of combining genomic and epidemiological metadata.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Network inference from multimodal data: A review of approaches from infectious disease transmission

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Methods for Outbreak Detection in Hospitals-Does One Size Fit All?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Reconstructing transmission trees for communicable diseases using densely sampled genetic data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Lack of Comprehensive Outbreak Detection in Hospitals

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Genomic Epidemiology: Whole-Genome-Sequencing-Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Genomic Epidemiology of an Endoscope-Associated Outbreak of Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Epidemiologic data and pathogen genome sequences: a powerful synergy for public health

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

The Distribution of Pairwise Genetic Distances: A Tool for Investigating Disease Transmission

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Multistate Point-Prevalence Survey of Health Care–Associated Infections

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Data use and effectiveness in electronic surveillance of healthcare associated infections in the 21st century: a systematic review

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Effectiveness of an automated surveillance system for intensive care unit-acquired infections

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Comparison of computerized surveillance and manual chart review for adverse events

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Reconstructing disease outbreaks from genetic data: a graph approach

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

WTW--an algorithm for identifying "who transmits to whom" in outbreaks of interhuman transmitted infectious agents

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Formulation of a model for automating infection surveillance: algorithmic detection of central-line associated bloodstream infection.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Molecular epidemiology of the foot-and-mouth disease virus outbreak in the United Kingdom in 2001

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

Using Laboratory-Based Surveillance Data for Prevention: An Algorithm for Detecting Salmonella Outbreaks

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6424617

10.1016/J.JBI.2019.103126

23 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30771483%20AND%20SRC:MED&resulttype=core&format=json

journals/jbi/MillerCSMSSPMHD19

23 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30771483%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

PubMed publication ID

30771483

1 reference