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<r><article key="journals/bioinformatics/AiharaCCLAMSHF24" mdate="2025-10-28">
<author pid="380/8293">Gohta Aihara</author>
<author orcid="0000-0002-4095-8104" pid="380/8245">Kalen Clifton</author>
<author orcid="0009-0009-0961-6665" pid="380/8087">Mayling Chen</author>
<author orcid="0009-0002-3486-5785" pid="68/2796">Zhuoyan Li</author>
<author pid="289/5216">Lyla Atta</author>
<author pid="380/8452">Brendan F. Miller</author>
<author pid="45/1264">Rahul Satija</author>
<author orcid="0000-0001-9961-7673" pid="380/8415">John W. Hickey</author>
<author orcid="0000-0002-0212-5451" pid="270/5502">Jean Fan</author>
<title>SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis.</title>
<year>2024</year>
<volume>40</volume>
<journal>Bioinform.</journal>
<number>7</number>
<ee type="oa">https://doi.org/10.1093/bioinformatics/btae412</ee>
<url>db/journals/bioinformatics/bioinformatics40.html#AiharaCCLAMSHF24</url>
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<r><article key="journals/nature/SnyderLPARRRGHS19" mdate="2026-06-03">
<author orcid="0000-0003-0784-7987" pid="50/5034">Michael P. Snyder</author>
<author pid="270/8380">Shin Lin</author>
<author pid="270/8078">Amanda Posgai</author>
<author pid="29/9505">Mark Atkinson</author>
<author pid="67/449">Aviv Regev</author>
<author pid="270/8541">Jennifer Rood</author>
<author pid="117/5088">Orit Rozenblatt-Rosen</author>
<author pid="270/7986">Leslie Gaffney</author>
<author pid="270/7960">Anna Hupalowska</author>
<author pid="45/1264">Rahul Satija</author>
<author pid="11/6907">Nils Gehlenborg</author>
<author pid="82/9357">Jay Shendure</author>
<author orcid="0000-0002-4533-9644" pid="124/2276">Julia Laskin</author>
<author orcid="0000-0002-3657-5485" pid="270/9056">Pehr Harbury</author>
<author pid="91/5130">Nicholas A. Nystrom</author>
<author orcid="0000-0002-9252-6039" pid="85/5558">Jonathan C. Silverstein</author>
<author pid="66/6963">Ziv Bar-Joseph</author>
<author pid="96/3115-20">Kun Zhang 0020</author>
<author pid="b/KatyBorner">Katy B&#246;rner</author>
<author orcid="0000-0002-0317-7608" pid="270/7966">Yiing Lin</author>
<author orcid="0000-0002-8896-6090" pid="62/10729">Richard Conroy</author>
<author pid="270/9411">Dena Procaccini</author>
<author pid="270/9041">Ananda L. Roy</author>
<author orcid="0000-0002-9789-7189" pid="202/9214">Ajay Pillai</author>
<author pid="270/8569">Marishka Brown</author>
<author pid="270/9410">Zorina S. Galis</author>
<author pid="24/7816">Long Cai</author>
<author pid="01/7068">Cole Trapnell</author>
<author pid="270/9155">Dana Jackson</author>
<author pid="31/5532">Garry P. Nolan</author>
<author pid="270/8999">William James Greenleaf</author>
<author pid="42/4498">Sylvia K. Plevritis</author>
<author orcid="0000-0002-7849-2135" pid="270/8670">Sara Ahadi</author>
<author pid="270/8967">Stephanie A. Nevins</author>
<author orcid="0000-0003-0571-3192" pid="05/8210">Hayan Lee</author>
<author orcid="0000-0002-1792-1768" pid="312/0750">Christian Martijn Schuerch</author>
<author pid="270/9460">Sarah Black</author>
<author pid="141/8440">Vishal Gautham Venkataraaman</author>
<author orcid="0000-0001-9205-3756" pid="270/9275">Ed Esplin</author>
<author pid="270/9248">Aaron Horning</author>
<author orcid="0000-0003-4533-9334" pid="117/7513">Amir Bahmani</author>
<author pid="20/3535">Xin Sun</author>
<author pid="j/SanjayJain6">Sanjay Jain 0006</author>
<author pid="217/2057">James S. Hagood</author>
<author pid="270/8395">Gloria Pryhuber</author>
<author pid="31/3320">Peter V. Kharchenko</author>
<author orcid="0000-0002-6325-7861" pid="23/7104">Bernd Bodenmiller</author>
<author orcid="0000-0003-2878-9296" pid="270/9313">Todd Brusko</author>
<author pid="270/7925">Michael Clare-Salzler</author>
<author pid="270/7969">Harry Nick</author>
<author orcid="0000-0002-2317-6194" pid="73/6235">Kevin Otto 0001</author>
<author pid="116/2395">Clive Wasserfall</author>
<author pid="270/8321">Marda Jorgensen</author>
<author pid="270/8869">Maigan Brusko</author>
<author pid="73/5202">Sergio Maffioletti</author>
<author pid="168/5778">Richard M. Caprioli</author>
<author orcid="0000-0001-9198-5498" pid="168/5759">Jeffrey M. Spraggins</author>
<author pid="270/8355">Danielle Gutierrez</author>
<author pid="239/1391">Nathan Heath Patterson</author>
<author pid="270/8056">Elizabeth K. Neumann</author>
<author orcid="0000-0001-8025-0883" pid="270/9037">Raymond Harris</author>
<author pid="282/0540">Mark P. de Caestecker</author>
<author pid="266/7761">Agnes B. Fogo</author>
<author pid="33/5954">Raf Van de Plas</author>
<author pid="66/209">Ken Lau</author>
<author pid="44/931">Guo-Cheng Yuan</author>
<author pid="02/562">Qian Zhu</author>
<author orcid="0000-0001-7650-7754" pid="245/1109">Ruben Dries</author>
<author pid="23/4378">Peng Yin</author>
<author orcid="0000-0002-5017-379X" pid="270/9398">Sinem K. Saka</author>
<author pid="270/9513">Jocelyn Y. Kishi</author>
<author orcid="0000-0001-9764-0546" pid="02/5889-217">Yu Wang 0217</author>
<author orcid="0000-0003-1747-2461" pid="270/8184">Isabel Goldaracena</author>
<author pid="90/9123">Dong Hye Ye</author>
<author pid="270/9059">Kristin E. Burnum-Johnson</author>
<author orcid="0000-0001-5108-2227" pid="270/8939">Paul D. Piehowski</author>
<author pid="83/7252">Charles Ansong</author>
<author pid="01/2082">Ying Zhu</author>
<author pid="270/9428">Tushar Desai</author>
<author pid="270/9395">Jay Mulye</author>
<author pid="270/9436">Peter Chou</author>
<author pid="270/9372">Monica Nagendran</author>
<author pid="90/4458">Sarah A. Teichmann</author>
<author pid="83/7067">Benedict Paten</author>
<author pid="88/220">Robert F. Murphy</author>
<author orcid="0000-0002-4202-5834" pid="26/4870-4">Jian Ma 0004</author>
<author pid="270/8239">Vladimir Yu. Kiselev</author>
<author pid="75/4537">Carl Kingsford</author>
<author pid="270/9202">Allyson Ricarte</author>
<author pid="124/1422">Maria Keays</author>
<author orcid="0000-0002-3289-1173" pid="352/2473">Sushma Anand Akoju</author>
<author pid="50/10258">Matthew Ruffalo</author>
<author pid="239/1539">Margaret Vella</author>
<author pid="270/8143">Chuck McCallum</author>
<author pid="266/7429">Leonard E. Cross</author>
<author orcid="0000-0001-8003-6860" pid="178/7611">Samuel H. Friedman</author>
<author pid="77/6962">Randy W. Heiland</author>
<author pid="25/3300">Bruce William Herr II</author>
<author orcid="0000-0002-9925-0151" pid="96/6962">Paul Macklin</author>
<author pid="270/7946">Ellen M. Quardokus</author>
<author pid="270/9337">Lisel Record</author>
<author pid="123/5375">James P. Sluka</author>
<author pid="27/9696">Griffin M. Weber</author>
<author pid="132/7545">Philip D. Blood</author>
<author pid="75/1574">Alexander Ropelewski</author>
<author pid="146/8684">William Shirey</author>
<author pid="270/7971">Robin M. Scibek</author>
<author orcid="0000-0002-8455-3213" pid="08/11447">Paula M. Mabee</author>
<author pid="63/10102">W. Christopher Lenhardt</author>
<author pid="43/9439">Kimberly Robasky</author>
<author pid="270/8070">Stavros Michailidis</author>
<author pid="64/7592">John C. Marioni</author>
<author pid="167/2523">Andrew Butler</author>
<author pid="270/8222">Tim Stuart</author>
<author orcid="0000-0003-3546-6153" pid="198/5010">Eyal Fisher</author>
<author orcid="0000-0001-7861-6997" pid="187/0422">Shila Ghazanfar</author>
<author pid="269/0174">G&#246;kcen Eraslan</author>
<author pid="270/8091">Tommaso Biancalani</author>
<author orcid="0000-0003-3720-8051" pid="270/8689">Eeshit D. Vaishnav</author>
<author pid="270/7939">Pothur Srinivas</author>
<author pid="270/9462">Aaron Pawlyk</author>
<author pid="270/8926">Salvatore Sechi</author>
<author pid="89/11039">Elizabeth L. Wilder</author>
<author pid="36/2768">James Anderson</author>
<title>The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.</title>
<pages>187-192</pages>
<year>2019</year>
<volume>574</volume>
<journal>Nat.</journal>
<number>7777</number>
<ee type="oa">https://doi.org/10.1038/s41586-019-1629-x</ee>
<ee>https://www.wikidata.org/entity/Q90617765</ee>
<url>db/journals/nature/nature574.html#SnyderLPARRRGHS19</url>
</article>
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<r><article key="journals/nature/MayerHBMBJABFS18" mdate="2026-02-01">
<author orcid="0000-0003-3152-5574" pid="157/5063">Christian Mayer</author>
<author orcid="0000-0001-6365-8254" pid="40/2247">Christoph Hafemeister</author>
<author orcid="0009-0003-2455-9992" pid="270/4537">Rachel C. Bandler</author>
<author pid="270/4425">Robert Machold</author>
<author orcid="0000-0003-1214-045X" pid="270/4446">Renata Batista Brito</author>
<author pid="270/4868">Xavier Jaglin</author>
<author pid="270/4371">Kathryn Allaway</author>
<author pid="167/2523">Andrew Butler</author>
<author orcid="0000-0002-9640-9278" pid="270/4612">Gord Fishell</author>
<author pid="45/1264">Rahul Satija</author>
<title>Developmental diversification of cortical inhibitory interneurons.</title>
<pages>457-462</pages>
<year>2018</year>
<volume>555</volume>
<journal>Nat.</journal>
<number>7697</number>
<ee>https://doi.org/10.1038/nature25999</ee>
<ee>https://www.wikidata.org/entity/Q50420532</ee>
<url>db/journals/nature/nature555.html#MayerHBMBJABFS18</url>
</article>
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<r><article key="journals/bioinformatics/SatijaHL10" mdate="2020-03-02">
<author pid="45/1264">Rahul Satija</author>
<author pid="06/2491">Jotun Hein</author>
<author orcid="0000-0002-3798-2058" pid="51/5872">Gerton Lunter</author>
<title>Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.</title>
<pages>2116-2120</pages>
<year>2010</year>
<volume>26</volume>
<journal>Bioinform.</journal>
<number>17</number>
<ee>https://doi.org/10.1093/bioinformatics/btq360</ee>
<ee>https://www.wikidata.org/entity/Q48197084</ee>
<url>db/journals/bioinformatics/bioinformatics26.html#SatijaHL10</url>
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<r><article key="journals/bioinformatics/SatijaPH08" mdate="2021-04-09">
<author pid="45/1264">Rahul Satija</author>
<author orcid="0000-0002-9164-6231" pid="52/2663">Lior Pachter</author>
<author pid="06/2491">Jotun Hein</author>
<title>Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.</title>
<pages>1236-1242</pages>
<year>2008</year>
<volume>24</volume>
<journal>Bioinform.</journal>
<number>10</number>
<ee>https://doi.org/10.1093/bioinformatics/btn104</ee>
<ee>https://www.wikidata.org/entity/Q50651674</ee>
<url>db/journals/bioinformatics/bioinformatics24.html#SatijaPH08</url>
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<co c="0"><na f="p/Plas:Raf_Van_de" pid="33/5954">Raf Van de Plas</na></co>
<co c="0"><na f="p/Plevritis:Sylvia_K=" pid="42/4498">Sylvia K. Plevritis</na></co>
<co c="0"><na f="p/Posgai:Amanda" pid="270/8078">Amanda Posgai</na></co>
<co c="0"><na f="p/Procaccini:Dena" pid="270/9411">Dena Procaccini</na></co>
<co c="0"><na f="p/Pryhuber:Gloria" pid="270/8395">Gloria Pryhuber</na></co>
<co c="0"><na f="q/Quardokus:Ellen_M=" pid="270/7946">Ellen M. Quardokus</na></co>
<co c="0"><na f="r/Record:Lisel" pid="270/9337">Lisel Record</na></co>
<co c="0"><na f="r/Regev:Aviv" pid="67/449">Aviv Regev</na></co>
<co c="0"><na f="r/Ricarte:Allyson" pid="270/9202">Allyson Ricarte</na></co>
<co c="0"><na f="r/Robasky:Kimberly" pid="43/9439">Kimberly Robasky</na></co>
<co c="0"><na f="r/Rood:Jennifer" pid="270/8541">Jennifer Rood</na></co>
<co c="0"><na f="r/Ropelewski:Alexander" pid="75/1574">Alexander Ropelewski</na></co>
<co c="0"><na f="r/Roy:Ananda_L=" pid="270/9041">Ananda L. Roy</na></co>
<co c="0"><na f="r/Rozenblatt=Rosen:Orit" pid="117/5088">Orit Rozenblatt-Rosen</na></co>
<co c="0"><na f="r/Ruffalo:Matthew" pid="50/10258">Matthew Ruffalo</na></co>
<co c="0"><na f="s/Saka:Sinem_K=" pid="270/9398">Sinem K. Saka</na></co>
<co c="0" n="2"><na f="s/Sch=uuml=rch:Christian_M=" pid="312/0750">Christian M. Sch&#252;rch</na><na>Christian Martijn Schuerch</na></co>
<co c="0"><na f="s/Scibek:Robin_M=" pid="270/7971">Robin M. Scibek</na></co>
<co c="0"><na f="s/Sechi:Salvatore" pid="270/8926">Salvatore Sechi</na></co>
<co c="0"><na f="s/Shendure:Jay" pid="82/9357">Jay Shendure</na></co>
<co c="0"><na f="s/Shirey:William" pid="146/8684">William Shirey</na></co>
<co c="0"><na f="s/Silverstein:Jonathan_C=" pid="85/5558">Jonathan C. Silverstein</na></co>
<co c="0"><na f="s/Sluka:James_P=" pid="123/5375">James P. Sluka</na></co>
<co c="0" n="2"><na f="s/Snyder_0001:Michael" pid="50/5034">Michael Snyder 0001</na><na>Michael P. Snyder</na></co>
<co c="0"><na f="s/Spraggins:Jeffrey_M=" pid="168/5759">Jeffrey M. Spraggins</na></co>
<co c="0"><na f="s/Srinivas:Pothur" pid="270/7939">Pothur Srinivas</na></co>
<co c="0"><na f="s/Stuart:Tim" pid="270/8222">Tim Stuart</na></co>
<co c="0"><na f="s/Sun:Xin" pid="20/3535">Xin Sun</na></co>
<co c="0"><na f="t/Teichmann:Sarah_A=" pid="90/4458">Sarah A. Teichmann</na></co>
<co c="0"><na f="t/Trapnell:Cole" pid="01/7068">Cole Trapnell</na></co>
<co c="0"><na f="v/Vaishnav:Eeshit_D=" pid="270/8689">Eeshit D. Vaishnav</na></co>
<co c="0"><na f="v/Vella:Margaret" pid="239/1539">Margaret Vella</na></co>
<co c="0"><na f="v/Venkataraaman:Vishal_Gautham" pid="141/8440">Vishal Gautham Venkataraaman</na></co>
<co c="0"><na f="w/Wang_0217:Yu" pid="02/5889-217">Yu Wang 0217</na></co>
<co c="0"><na f="w/Wasserfall:Clive" pid="116/2395">Clive Wasserfall</na></co>
<co c="0"><na f="w/Weber:Griffin_M=" pid="27/9696">Griffin M. Weber</na></co>
<co c="0"><na f="w/Wilder:Elizabeth_L=" pid="89/11039">Elizabeth L. Wilder</na></co>
<co c="0"><na f="y/Ye:Dong_Hye" pid="90/9123">Dong Hye Ye</na></co>
<co c="0"><na f="y/Yin:Peng" pid="23/4378">Peng Yin</na></co>
<co c="0"><na f="y/Yuan:Guo=Cheng" pid="44/931">Guo-Cheng Yuan</na></co>
<co c="0"><na f="z/Zhang_0020:Kun" pid="96/3115-20">Kun Zhang 0020</na></co>
<co c="0"><na f="z/Zhu:Qian" pid="02/562">Qian Zhu</na></co>
<co c="0"><na f="z/Zhu:Ying" pid="01/2082">Ying Zhu</na></co>
</coauthors>
</dblpperson>

