Comparison by partition - Finding Petri nets similarity on the basis of subnets.

Piotr Formanowicz Poznan University of Technology, Poland https://zbmath.org/authors/?q=ai:formanowicz.piotr https://orcid.org/0000-0003-2719-3677 https://www.wikidata.org/entity/Q24949631

Bartlomiej Szawulak Marcin Radom Piotr Formanowicz Comparison by partition - Finding Petri nets similarity on the basis of subnets. 109775 2025 187 Comput. Biol. Medicine https://doi.org/10.1016/j.compbiomed.2025.109775 db/journals/cbm/cbm187.html#SzawulakRF25 streams/journals/cbm

Adam Aron Rynkiewicz Raúl Palma Piotr Formanowicz Universal entity linking. 112185 2025 161 Eng. Appl. Artif. Intell. https://doi.org/10.1016/j.engappai.2025.112185 db/journals/eaai/eaai161.html#RynkiewiczPF25 streams/journals/eaai

Bartlomiej Szawulak Piotr Formanowicz Graphlet Degree Distribution Sensibility in Petri Net-Based Models of Biological Systems. 1947-1952 2025 22 IEEE Trans. Comput. Biol. Bioinform. 4 https://doi.org/10.1109/tcbbio.2025.3555827 db/journals/tcbb/tcbb22.html#SzawulakF25 streams/journals/tcbb

Kaja Gutowska Piotr Formanowicz Searching for significant reactions and subprocesses in models of biological systems based on Petri nets. 107729 2024 January 168 Comput. Biol. Medicine https://doi.org/10.1016/j.compbiomed.2023.107729 db/journals/cbm/cbm168.html#GutowskaF24

Mateusz Twardawa Kaja Gutowska Piotr Formanowicz Exploring relationship between hypercholesterolemia and instability of atherosclerotic plaque - An approach based on a matrix population model. 2450029:1-2450029:18 2024 December 22 J. Bioinform. Comput. Biol. 6 https://doi.org/10.1142/S021972002450029X db/journals/jbcb/jbcb22.html#TwardawaGF24 streams/journals/jbcb

Marcin Radom Agnieszka Rybarczyk Igor Piekarz Piotr Formanowicz Algorithms for evaluation of minimal cut sets. 104740 2024 159 J. Biomed. Informatics https://doi.org/10.1016/j.jbi.2024.104740 db/journals/jbi/jbi159.html#RadomRPF24 streams/journals/jbi

Salim Janji Piotr Wawrzyniak Piotr Formanowicz Adrian Kliks Integrating UAV-Enabled Base Stations in 3D Networks: QoS-Aware Joint Fronthaul and Backhaul Design. 2024 abs/2404.17547 CoRR https://doi.org/10.48550/arXiv.2404.17547 db/journals/corr/corr2404.html#abs-2404-17547

Marcin Radom Piotr Formanowicz Extended time Petri nets. 2024 abs/2405.09208 CoRR https://doi.org/10.48550/arXiv.2405.09208 db/journals/corr/corr2405.html#abs-2405-09208

Bartlomiej Szawulak Marcin Radom Piotr Formanowicz Comparing Petri net-based models of biological systems using Holmes. 4652-4653 2022 38 Bioinform. 19 https://doi.org/10.1093/bioinformatics/btac540 db/journals/bioinformatics/bioinformatics38.html#SzawulakRF22

Kaja Gutowska Piotr Formanowicz On anti-occurrence of subsets of transitions in Petri net-based models of complex biological systems. 104793 2022 222 Biosyst. https://doi.org/10.1016/j.biosystems.2022.104793 db/journals/biosystems/biosystems222.html#GutowskaF22

Kaja Gutowska Dorota Formanowicz Piotr Formanowicz Systems Approach Based on Petri Nets as a Method for Modeling and Analysis of Complex Biological Systems Presented on the Example of Atherosclerosis Development Process. 579-586 2020 KKA https://doi.org/10.1007/978-3-030-50936-1_49 conf/kka/2020 db/conf/kka/kka2020.html#GutowskaFF20

Adam Kozak Tomasz Glowacki Piotr Formanowicz A method for constructing artificial DNA libraries based on generalized de Bruijn sequences. 127-144 2019 259 Discret. Appl. Math. https://doi.org/10.1016/j.dam.2018.12.029 db/journals/dam/dam259.html#KozakGF19

Dorota Formanowicz Marcin Radom Agnieszka Rybarczyk Piotr Formanowicz The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis - modeled and analyzed using a Petri net-based approach. 71-87 2018 165 Biosyst. https://doi.org/10.1016/j.biosystems.2018.01.002 https://www.wikidata.org/entity/Q50113837 db/journals/biosystems/biosystems165.html#FormanowiczRRF18

Dorota Formanowicz Agnieszka Rybarczyk Piotr Formanowicz Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets. 143-165 2018 160 Fundam. Informaticae 1-2 https://doi.org/10.3233/FI-2018-1678 https://www.wikidata.org/entity/Q129888056 db/journals/fuin/fuin160.html#FormanowiczRF18

Marcin Radom Agnieszka Rybarczyk Bartlomiej Szawulak Hubert Andrzejewski Piotr Chabelski Adam Kozak Piotr Formanowicz Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems. 3822-3823 2017 33 Bioinform. 23 https://doi.org/10.1093/bioinformatics/btx492 https://www.wikidata.org/entity/Q47666869 db/journals/bioinformatics/bioinformatics33.html#RadomRSACKF17

Kamil Kwarciak Marcin Radom Piotr Formanowicz A multilevel ant colony optimization algorithm for classical and isothermic DNA sequencing by hybridization with multiplicity information available. 109-120 2016 61 Comput. Biol. Chem. https://doi.org/10.1016/j.compbiolchem.2016.01.010 https://www.wikidata.org/entity/Q35923998 db/journals/candc/candc61.html#KwarciakRF16

Kamil Kwarciak Piotr Formanowicz Tabu search algorithm for DNA sequencing by hybridization with multiplicity information available. 1-10 2014 47 Comput. Oper. Res. https://doi.org/10.1016/j.cor.2014.01.007 db/journals/cor/cor47.html#KwarciakF14

Adam Kozak Tomasz Glowacki Piotr Formanowicz On a generalized model of labeled graphs. 1818-1827 2013 161 Discret. Appl. Math. 13-14 https://doi.org/10.1016/j.dam.2013.02.019 db/journals/dam/dam161.html#KozakGF13

Dorota Formanowicz Adam Kozak Tomasz Glowacki Marcin Radom Piotr Formanowicz Hemojuvelin-hepcidin axis modeled and analyzed using Petri nets. 1030-1043 2013 46 J. Biomed. Informatics 6 https://doi.org/10.1016/j.jbi.2013.07.013 https://www.wikidata.org/entity/Q47759318 db/journals/jbi/jbi46.html#FormanowiczKGRF13

Piotr Formanowicz Krzysztof Tanas The Fan-Raspaud conjecture: A randomized algorithmic approach and application to the pair assignment problem in cubic networks. 765-778 2012 22 Int. J. Appl. Math. Comput. Sci. 3 https://doi.org/10.2478/v10006-012-0057-y https://www.wikidata.org/entity/Q123154120 db/journals/amcs/amcs22.html#FormanowiczT12

Marcin Radom Agnieszka Rybarczyk Renzo Kottmann Piotr Formanowicz Marta Szachniuk Frank Oliver Glöckner Dietrich Rebholz-Schuhmann Jacek Blazewicz Poseidon: An information retrieval and extraction system for metagenomic marine science. 10-15 2012 12 Ecol. Informatics https://doi.org/10.1016/j.ecoinf.2012.07.003 https://www.wikidata.org/entity/Q57387726 db/journals/ecoi/ecoi12.html#RadomRKFSGRB12

Jacek Blazewicz Piotr Formanowicz Pawel Kedziora Pawel Marciniak Przemyslaw Taront Adaptive memory programming: local search parallel algorithms for phylogenetic tree construction. 75-94 2011 183 Ann. Oper. Res. 1 https://doi.org/10.1007/s10479-010-0682-5 https://www.wikidata.org/entity/Q57387729 db/journals/anor/anor183.html#BlazewiczFKMT11

Szymon Wasik Paulina Jackowiak Jacek B. Krawczyk Pawel Kedziora Piotr Formanowicz Marek Figlerowicz Jacek Blazewicz Towards Prediction of HCV Therapy Efficiency. 185-199 2010 2010 Comput. Math. Methods Medicine 2 https://doi.org/10.1080/17486700903170712 https://www.wikidata.org/entity/Q42997041 db/journals/cmmm/cmmm2010.html#WasikJKKFFB10

Jacek Blazewicz Marcin Borowski Piotr Formanowicz Tomasz Glowacki Genetic and Tabu search algorithms for peptide assembly problem. 153-166 2010 44 RAIRO Oper. Res. 2 https://doi.org/10.1051/ro/2010012 https://www.wikidata.org/entity/Q57387737 db/journals/rairo/rairo44.html#BlazewiczBFG10

Jacek Blazewicz Piotr Formanowicz Pawel Wojciechowski Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark. 675-678 2009 19 Int. J. Appl. Math. Comput. Sci. 4 https://doi.org/10.2478/v10006-009-0054-y https://www.wikidata.org/entity/Q57387744 db/journals/amcs/amcs19.html#BlazewiczFW09

Andrea Sackmann Dorota Formanowicz Piotr Formanowicz Jacek Blazewicz New insights into the human body iron metabolism analyzed by a Petri net based approach. 104-113 2009 96 Biosyst. 1 https://doi.org/10.1016/j.biosystems.2008.12.003 https://www.wikidata.org/entity/Q51855916 db/journals/biosystems/biosystems96.html#SackmannFFB09

Jacek Blazewicz Dorota Formanowicz Piotr Formanowicz Andrea Sackmann Michal Sajkowski Modeling the process of human body iron homeostasis using a variant of timed Petri nets. 2221-2231 2009 157 Discret. Appl. Math. 10 https://doi.org/10.1016/j.dam.2008.06.053 https://www.wikidata.org/entity/Q57387742 db/journals/dam/dam157.html#BlazewiczFFSS09

Andrea Sackmann Dorota Formanowicz Piotr Formanowicz Ina Koch Jacek Blazewicz An analysis of the Petri net based model of the human body iron homeostasis process. 1-10 2007 31 Comput. Biol. Chem. 1 https://doi.org/10.1016/j.compbiolchem.2006.09.005 https://www.wikidata.org/entity/Q51928987 db/journals/candc/candc31.html#SackmannFFKB07

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Petra Schuurman Gerhard J. Woeginger A polynomial time equivalence between DNA sequencing and the exact perfect matching problem. 154-162 2007 4 Discret. Optim. 2 https://doi.org/10.1016/j.disopt.2006.07.004 https://www.wikidata.org/entity/Q57387753 db/journals/disopt/disopt4.html#BlazewiczFKSW07

Dorota Formanowicz Andrea Sackmann Piotr Formanowicz Jacek Blazewicz Petri net based model of the body iron homeostasis. 476-485 2007 40 J. Biomed. Informatics 5 https://doi.org/10.1016/j.jbi.2006.12.001 https://www.wikidata.org/entity/Q51924382 db/journals/jbi/jbi40.html#FormanowiczSFB07

Jacek Blazewicz Piotr Formanowicz Multistage isothermic sequencing by hybridization. 69-77 2005 29 Comput. Biol. Chem. 1 https://doi.org/10.1016/j.compbiolchem.2004.12.001 https://www.wikidata.org/entity/Q33211321 db/journals/candc/candc29.html#BlazewiczF05

Cherif Sadfi Bernard Penz Christophe Rapine Jacek Blazewicz Piotr Formanowicz An improved approximation algorithm for the single machine total completion time scheduling problem with availability constraints. 3-10 2005 161 Eur. J. Oper. Res. 1 https://doi.org/10.1016/j.ejor.2003.08.026 https://www.wikidata.org/entity/Q57387775 db/journals/eor/eor161.html#SadfiPRBF05

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Selected combinatorial problems of computational biology. 585-597 2005 161 Eur. J. Oper. Res. 3 https://doi.org/10.1016/j.ejor.2003.10.054 https://www.wikidata.org/entity/Q57387787 db/journals/eor/eor161.html#BlazewiczFK05

Jacek Blazewicz Marcin Borowski Piotr Formanowicz Maciej Stobiecki Tabu Search Method for Determining Sequences of Amino Acids in Long Polypeptides. 22-32 https://doi.org/10.1007/978-3-540-32003-6_3 2005 conf/evoW/2005 EvoWorkshops db/conf/evoW/evoW2005.html#BlazewiczBFS05

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Wojciech T. Markiewicz Aleksandra Swiercz Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries. 11-19 2004 28 Comput. Biol. Chem. 1 https://doi.org/10.1016/j.compbiolchem.2003.12.002 https://www.wikidata.org/entity/Q33197906 db/journals/candc/candc28.html#BaewiczFKMw04

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Wojciech T. Markiewicz Sequencing by hybridization with isothermic oligonucleotide libraries. 40-51 2004 145 Discret. Appl. Math. 1 https://doi.org/10.1016/j.dam.2003.09.006 https://www.wikidata.org/entity/Q57387802 db/journals/dam/dam145.html#BlazewiczFKM04

Ryszard W. Adamiak Jacek Blazewicz Piotr Formanowicz Zofia Gdaniec Marta Kasprzak Mariusz Popenda Marta Szachniuk An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes. 163-179 2004 11 J. Comput. Biol. 1 https://doi.org/10.1089/106652704773416948 https://www.wikidata.org/entity/Q51999856 db/journals/jcb/jcb11.html#AdamiakBFGKPS04

Jacek Blazewicz Piotr Formanowicz Radoslaw Urbaniak DNA Based Algorithms for Some Scheduling Problems. 673-683 2003 conf/evoW/2003 EvoWorkshops https://doi.org/10.1007/3-540-36605-9_61 db/conf/evoW/evoW2003.html#BlazewiczFU03 Jacek Blazewicz Piotr Formanowicz Pawel Kedziora Pawel Wojciechowski Parallel Algorithms for Evolutionary History Reconstruction. 1138-1145 https://doi.org/10.1007/978-3-540-24669-5_146 2003 conf/ppam/2003 PPAM db/conf/ppam/ppam2003.html#BlazewiczFKW03

Jacek Blazewicz Piotr Formanowicz Frédéric Guinand Marta Kasprzak A heuristic managing errors for DNA sequencing. 652-660 2002 18 Bioinform. 5 db/journals/bioinformatics/bioinformatics18.html#BlazewiczFGK02 https://doi.org/10.1093/bioinformatics/18.5.652 https://www.wikidata.org/entity/Q48632604

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Daniel Kobler On the recognition of de Bruijn graphs and their induced subgraphs. 81-92 2002 245 Discret. Math. 1-3 https://doi.org/10.1016/S0012-365X(01)00133-9 https://www.wikidata.org/entity/Q57387815 db/journals/dm/dm245.html#BlazewiczFKK02

Wieslaw Kubiak Jacek Blazewicz Piotr Formanowicz Joachim Breit Günter Schmidt 0002 Two-machine flow shops with limited machine availability. 528-540 2002 136 Eur. J. Oper. Res. 3 https://doi.org/10.1016/S0377-2217(01)00083-2 https://www.wikidata.org/entity/Q57387831 db/journals/eor/eor136.html#KubiakBFBS02

Jacek Blazewicz Piotr Formanowicz Scheduling jobs in open shops with limited machine availability. 149-156 2002 36 RAIRO Oper. Res. 2 https://doi.org/10.1051/ro:2002008 https://www.wikidata.org/entity/Q57387820 db/journals/rairo/rairo36.html#BlazewiczF02

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Petra Schuurman Gerhard J. Woeginger DNA Sequencing, Eulerian Graphs, and the Exact Perfect Matching Problem. 13-24 2002 conf/wg/2002 WG https://doi.org/10.1007/3-540-36379-3_2 db/conf/wg/wg2002.html#BlazewiczFKSW02

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Marcin Jaroszewski Wojciech T. Markiewicz Construction of DNA restriction maps based on a simplified experiment. 398-404 2001 17 Bioinform. 5 db/journals/bioinformatics/bioinformatics17.html#BlazewiczFKJM01 https://doi.org/10.1093/bioinformatics/17.5.398 https://www.wikidata.org/entity/Q48673713

Marie-Laure Espinouse Piotr Formanowicz Bernard Penz Complexity results and approximation algorithms for the two machine no-wait flow-shop with limited machine availability. 116-121 2001 52 J. Oper. Res. Soc. 1 https://doi.org/10.1057/palgrave.jors.2601025 db/journals/jors/jors52.html#EspinouseFP01

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Wojciech T. Markiewicz Jan Weglarz Tabu search for DNA sequencing with false negatives and false positives. 257-265 2000 125 Eur. J. Oper. Res. 2 https://doi.org/10.1016/S0377-2217(99)00456-7 https://www.wikidata.org/entity/Q57387840 db/journals/eor/eor125.html#BlazewiczFKMW00

Jacek Blazewicz Maciej Drozdowski Piotr Formanowicz Wieslaw Kubiak Günter Schmidt 0002 Scheduling preemptable tasks on parallel processors with limited availability. 1195-1211 2000 26 Parallel Comput. 9 db/journals/pc/pc26.html#BlazewiczDFKS00 https://doi.org/10.1016/S0167-8191(00)00035-1 https://www.wikidata.org/entity/Q57387838

Jacek Blazewicz Piotr Formanowicz Marta Kasprzak Wojciech T. Markiewicz Jan Weglarz DNA Sequencing With Positive and Negative Errors. 113-123 1999 6 J. Comput. Biol. 1 db/journals/jcb/jcb6.html#BlazewiczFKMW99 https://doi.org/10.1089/cmb.1999.6.113 https://www.wikidata.org/entity/Q52216473

Ryszard W. Adamiak Hubert Andrzejewski Jacek Blazewicz Marcin Borowski Joachim Breit Piotr Chabelski Maciej Drozdowski Marie-Laure Espinouse Marek Figlerowicz Dorota Formanowicz Zofia Gdaniec Frank Oliver Glöckner Tomasz Glowacki Frédéric Guinand Kaja Gutowska Paulina Jackowiak Salim Janji Marcin Jaroszewski Marta Kasprzak Pawel Kedziora Adrian Kliks Daniel Kobler Ina Koch Renzo Kottmann Adam Kozak Jacek B. Krawczyk Wieslaw Kubiak Kamil Kwarciak Pawel Marciniak Wojciech T. Markiewicz Raúl Palma Bernard Penz Igor Piekarz Mariusz Popenda Marcin Radom Christophe Rapine Dietrich Rebholz-Schuhmann Agnieszka Rybarczyk Adam Aron Rynkiewicz Andrea Sackmann Cherif Sadfi Michal Sajkowski Günter Schmidt 0002 Petra Schuurman Maciej Stobiecki Aleksandra Swiercz Marta Szachniuk Bartlomiej Szawulak Krzysztof Tanas Przemyslaw Taront Mateusz Twardawa Radoslaw Urbaniak Szymon Wasik Piotr Wawrzyniak Jan Weglarz Gerhard J. Woeginger Pawel Wojciechowski