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ATOMIC STRUCTURE OF THE RAPAMYCIN HUMAN IMMUNOPHILIN FKBP-12 COMPLEX

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Work: 
    0.165 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history. 

Literature

Atomic Structure of the Rapamycin Human Immunophilin Fkbp-12 Complex

Van Duyne, G.D., Standaert, R.F., Schreiber, S.L., Clardy, J.

(1991) J Am Chem Soc 113: 7433

    Macromolecule Content 

    • Total Structure Weight: 12.75 kDa 
    • Atom Count: 1,037 
    • Modeled Residue Count: 107 
    • Deposited Residue Count: 107 
    • Unique protein chains: 1

    Macromolecules

    Find similar proteins by:
    |  3D Structure
    Entity ID: 1
    MoleculeChains  Sequence LengthOrganismDetailsImage
    FK506 BINDING PROTEIN107Homo sapiensMutation(s): 0 
    EC: 5.2.1.8
    UniProt & NIH Common Fund Data Resources
    Find proteins for P62942 (Homo sapiens)
    Explore P62942 
    Go to UniProtKB:  P62942
    PHAROS:  P62942
    GTEx:  ENSG00000088832 
    Entity Groups
    Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
    UniProt GroupP62942
    Sequence Annotations
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    Reference Sequence

    Small Molecules

    Ligands 1 Unique
    IDChains Name / Formula / InChI Key2D Diagram3D Interactions
    RAP

    Query on RAP


    Download:Ideal Coordinates CCD File
    		B [auth A]RAPAMYCIN IMMUNOSUPPRESSANT DRUG
    C51 H79 N O13
    QFJCIRLUMZQUOT-HPLJOQBZSA-N

    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 1.70 Å
    • R-Value Work:  0.165 (Depositor) 
    Space Group: P 21 21 21
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 45.42α = 90
    b = 49.16β = 90
    c = 54.74γ = 90
    Software Package:
    Software NamePurpose
    MERLOTphasing
    X-PLORmodel building
    X-PLORrefinement
    X-PLORphasing

    Structure Validation

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    View more in-depth experimental data

    Entry History 

    Deposition Data

    Revision History  (Full details and data files)

    • Version 1.0: 1993-10-31
      Type: Initial release
    • Version 1.1: 2008-03-03
      Changes: Version format compliance
    • Version 1.2: 2011-07-13
      Changes: Version format compliance
    • Version 1.3: 2024-02-07
      Changes: Data collection, Database references, Derived calculations