FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data. (Q30863683)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25338717%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

title

FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data (English)

1 reference

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21 February 2020

1 reference

1 reference

Youri Hoogstrate

1

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21 February 2020

publication date

22 October 2014

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21 February 2020

language of work or name

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21 February 2020

volume

31

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21 February 2020

issue

5

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21 February 2020

page(s)

665-673

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describes a project that uses

21 February 2020

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SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer

1 reference

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Small RNA expression and deep sequencing analyses of the nucleolus reveal the presence of nucleolus‐associated microRNAs

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Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs

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Small RNAs derived from structural non-coding RNAs

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Importance of the RNA secondary structure for the relative accumulation of clustered viral microRNAs

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Implication of snoRNA U50 in human breast cancer

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A human snoRNA with microRNA-like functions

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The mechanics of miRNA-mediated gene silencing: a look under the hood of miRISC.

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Discovering microRNAs from deep sequencing data using miRDeep

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RNA structure and function in C/D and H/ACA s(no)RNPs.

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The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

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miRBase: integrating microRNA annotation and deep-sequencing data

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Evidence for human microRNA-offset RNAs in small RNA sequencing data

21 January 2018

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CoRAL: predicting non-coding RNAs from small RNA-sequencing data

21 January 2018

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MicroRNAs: small RNAs with a big role in gene regulation

21 January 2018

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Beyond microRNA--novel RNAs derived from small non-coding RNA and their implication in cancer

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Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis

21 January 2018

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Identification of human miRNA precursors that resemble box C/D snoRNAs

21 January 2018

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Sequence logos: a new way to display consensus sequences

21 January 2018

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Human box C/D snoRNA processing conservation across multiple cell types

21 January 2018

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Transfer RNA-derived fragments: origins, processing, and functions

21 January 2018

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Characterization of the Melanoma miRNAome by Deep Sequencing

21 January 2018

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Angiogenin cleaves tRNA and promotes stress-induced translational repression

21 January 2018

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RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes

21 January 2018

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Human seminal fluid as a source of prostate cancer-specific microRNA biomarkers

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU696

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU696

10.1093/BIOINFORMATICS/BTU696

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25338717%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/HoogstrateJM15

21 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference