PatternMarkers &amp; GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF. (Q31160335)

25 June 2018

title

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF. (English)

1 reference

25 June 2018

0 references

9

1 reference

25 June 2018

Elana J. Fertig

16

1 reference

25 June 2018

Daria A Gaykalova

12

object named as

Daria A Gaykalova

1 reference

25 June 2018

author name string

Genevieve L Stein-O'Brien

1

1 reference

25 June 2018

Jacob L Carey

2

1 reference

25 June 2018

Wai Shing Lee

3

1 reference

25 June 2018

Michael Considine

4

1 reference

25 June 2018

Alexander V Favorov

5

1 reference

25 June 2018

Emily Flam

6

1 reference

25 June 2018

Theresa Guo

7

1 reference

25 June 2018

Sijia Li

8

1 reference

25 June 2018

Thomas Sherman

10

1 reference

25 June 2018

Shawn Sivy

11

1 reference

25 June 2018

Ronald D McKay

13

1 reference

25 June 2018

Michael F Ochs

14

1 reference

25 June 2018

Carlo Colantuoni

15

1 reference

25 June 2018

publication date

1 June 2017

1 reference

25 June 2018

language of work or name

0 references

1 reference

25 June 2018

volume

33

1 reference

25 June 2018

issue

12

1 reference

25 June 2018

page(s)

1892-1894

1 reference

25 June 2018

Human genomics. The human transcriptome across tissues and individuals

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Discovering subgroups of patients from DNA copy number data using NMF on compacted matrices

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Preferential activation of the hedgehog pathway by epigenetic modulations in HPV negative HNSCC identified with meta-pathway analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

The non-negative matrix factorization toolbox for biological data mining

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Gene expression signatures modulated by epidermal growth factor receptor activation and their relationship to cetuximab resistance in head and neck squamous cell carcinoma

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Detection of treatment-induced changes in signaling pathways in gastrointestinal stromal tumors using transcriptomic data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Matrix factorization for recovery of biological processes from microarray data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

bioNMF: a web-based tool for nonnegative matrix factorization in biology.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

A stream of cells migrating from the caudal telencephalon reveals a link between the amygdala and neocortex

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

LS-NMF: a modified non-negative matrix factorization algorithm utilizing uncertainty estimates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Metagenes and molecular pattern discovery using matrix factorization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

Matrix Factorization for Transcriptional Regulatory Network Inference

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5860188

10.1093/BIOINFORMATICS/BTX058

10 December 2018

Identifiers

DOI

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l276pdczxzb23pxgsoia4an2ny

30 July 2022

journals/bioinformatics/Stein-OBrienCLC17

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_l276pdczxzb23pxgsoia4an2ny

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l276pdczxzb23pxgsoia4an2ny

30 July 2022

https://api.fatcat.wiki/v0/release/l276pdczxzb23pxgsoia4an2ny

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/l276pdczxzb23pxgsoia4an2ny

PubMed publication ID

1 reference

30 July 2022