The Trouble with Long-Range Base Pairs in RNA Folding (Q56271609)

4

0 references

Peter F. Stadler

object named as

Peter F. Stadler

6

0 references

author name string

Stephan H. Bernhart

2

0 references

Gero Doose

3

0 references

Jing Qin

5

0 references

Sebastian Will

Lecture Notes in Computer Science

7

0 references

publication date

2013

0 references

language of work or name

English

0 references

published in

0 references

page(s)

1-11

0 references

cites work

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Local RNA base pairing probabilities in large sequences

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Rfold: an exact algorithm for computing local base pairing probabilities

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

A detailed investigation of accessibilities around target sites of siRNAs and miRNAs

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Global or local? Predicting secondary structure and accessibility in mRNAs

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

C o F old : an RNA secondary structure prediction method that takes co-transcriptional folding into account

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Global Organization of a Positive-strand RNA Virus Genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Modulation of alternative splicing by long-range RNA structures in Drosophila

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Evidence for widespread association of mammalian splicing and conserved long-range RNA structures

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

The ends of a large RNA molecule are necessarily close

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

The end-to-end distance of RNA as a randomly self-paired polymer.

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Expected distance between terminal nucleotides of RNA secondary structures

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

The 5′-3′ Distance of RNA Secondary Structures

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

RNA STRAND: the RNA secondary structure and statistical analysis database

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

31 March 2020

tmRDB (tmRNA database)

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Kinship in the SRP RNA family

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

The Ribonuclease P Database

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Improved RNA secondary structure prediction by maximizing expected pair accuracy

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

31 March 2020

ViennaRNA Package 2.0

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

A comprehensive comparison of comparative RNA structure prediction approaches

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

A study of accessible motifs and RNA folding complexity

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

Practicality and time complexity of a sparsified RNA folding algorithm

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

On the combinatorics of sparsification

31 March 2020

1 reference

https://api.crossref.org/works/10.1007%2F978-3-319-02624-4_1

10.1007/978-3-319-02624-4_1

31 March 2020

Identifiers

DOI

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/frjhtz63fngx3mlrdllc7pqfla

mapped directly with Wikidata item

30 July 2022

based on heuristic

DBLP publication ID

conf/wob/AmmanBDHQSW13

1 reference

DBLP Dataset 2021-01-02

release_frjhtz63fngx3mlrdllc7pqfla

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/frjhtz63fngx3mlrdllc7pqfla